| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_0428 |
|---|
| Symbol | |
|---|
| ID | 4030122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007964 |
|---|
| Strand | + |
|---|
| Start bp | 472130 |
|---|
| End bp | 473113 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637968957 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_575779 |
|---|
| Protein GI | 92116050 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCGC CTGTCTCCCC GGAAAAGATC GACCTGCTGG TGTACGGACC GCACAGGCCG
ATCGTCGACA ACGGTTTTAC CGATCAGTTC GTGCTGCATC ATTGCGAGAA GCAGGCCGAT
CTGGAACGCC TGACGCCCGC GGTCGCCGGG AAAATCCGCG GCATGGCCAT CACCGATTCC
GTTCCTTGCC GTAGCACGGC GCAGACGCGC TTTCCAAAAC TCGAGATCAT GTCCTCCTTT
GGAGTCGGCT ACGACCACAT CGATACGGAT CACGCGCGCG AACACAACAT CGTCGTCACC
AACACACCCG ACGTCCTGAC CGAGGAGGTC GCGGACGTCG CAATCGGCCT GCTGATCGCG
ACGTTGCGCG AATTCGTCAA GGCGGATCGT TATGTGCGCG AGGGATTGTG GGCCACGCAG
GACTTCCCCT TGAGCGCCGG CTCGCTGCGC GACCGCAAGG TCGGCATGGT CGGCATGGGC
CGGATCGGTC AGGCGATCGC GCGGCGGCTC GATGCGGCGC GGGTGCCGGT TGTCTATCAT
GCGCGCAATC CAGCCGCGGG CGTGTCCTAT CAGCACTATC CGAACCTGAT CGAGATGGCG
AAGGCGGTCG ACACGTTGAT TGTCATCACG CCCGGGGGCG CATCGACGCT GAAGATGATC
GATGCCGATG TCCTGGCGGC GCTCGGGCCG CGCGGCGTCA TCGTCAACAT GGCGCGGGGC
TCCGTCATTG ACGAACCGGC GCTGATCCAC GCGCTGAAGT CCGGCATCAC CCTCGCGGCC
GGTCTCGACG TGTTCGCCAA TGAGCCGGAC GTGCCGGAAG AACTGCGCGC GTTGCAGAAT
GTCGTGTTGT TGCCGCACAT CGGTTCTGCG TCGGTGGTGA CACGCGATGT GATGGACCAG
CTTGTGGTCG ATAATCTCAG GGCGTGGTTC GCCGGCAAGC CGCCGCTGAC GCCGGTTCCG
GAGACGCCGG TGGAGGGACG CTAG
|
|---|
| Protein sequence | MAAPVSPEKI DLLVYGPHRP IVDNGFTDQF VLHHCEKQAD LERLTPAVAG KIRGMAITDS
VPCRSTAQTR FPKLEIMSSF GVGYDHIDTD HAREHNIVVT NTPDVLTEEV ADVAIGLLIA
TLREFVKADR YVREGLWATQ DFPLSAGSLR DRKVGMVGMG RIGQAIARRL DAARVPVVYH
ARNPAAGVSY QHYPNLIEMA KAVDTLIVIT PGGASTLKMI DADVLAALGP RGVIVNMARG
SVIDEPALIH ALKSGITLAA GLDVFANEPD VPEELRALQN VVLLPHIGSA SVVTRDVMDQ
LVVDNLRAWF AGKPPLTPVP ETPVEGR
|
|---|
| |