| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_3609 |
|---|
| Symbol | |
|---|
| ID | 9247478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 4325798 |
|---|
| End bp | 4328254 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003681515 |
|---|
| Protein GI | 297562541 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCCTC CCCGCCACAA CCTGCCCCTG TCCGCCGGCG AGTTCATCAG CTTCGTCGGA
CGCGAGCGCG ACATCGTCGA CCTGGGCCGC CTCCTGGGCA CCGCCCGGAT GGTCACGCTG
ACCGGTACCG GCGGTATCGG CAAGACGCGC CTGGCCCTGC ACCTGGCCGA ACGCGTCATG
CGCCGGTTCC CCGACGGCGT GCGCTTCGTC GACCTGAGCG AGGCCTCCAC CCACGACCAG
GCGCTGCGCG CGGTCGCGGG CAGCCTCCAG GCGGTGCAGG ACGACTCGCG CACCATGACG
GACGCCGTCA TCACCTCGCT GCGCACCCGC AACCTGCTGC TGCTCCTGGA CACCTGCGAG
CACGCCGTGG GGCCGATGGC GCAGCTGTGC CAGGCCGTGC TGCGCGACTG CCCCCGGGTG
CGCATCCTGG TGACCAGCCG CCAGCCCCTG CACGTTCCCG AGGAGAACAT CTGGCGGGTG
CCGCCGCTGT CCCTGCCAGC GCGGCCCACC CCCACCGACC CCTACGCGGC CGACCCCGCG
CCCATCCCCC GGCGCGACAC CCAGCGCTAC GAGTCGGTGC GCCTGTTCGT GACCCGCGCG
CACGCCGCGC GCGCCGGGTT CGAGATGACC AGGGAGAACT CCGGTTACAT CGCGGAGATC
TGCCGGATGC TGGACGGCAT GCCGCTGGCG ATCGAGCTGG CCGCCGCACG GGTGCGGGTG
CTGTCGGTGC AGCAGATCCT GCGCCGCCTG GACGACCGCT TCCAGCTGTT GACCAGCGAC
GGGTCGGAGG ACCTGCCGCC GCGCCAGCGG ACGCTGCGCG CGGTCCTGGA GTGGAGCCAC
GAACTGCTCA CCGAGCCGGA GCGGCTCCTG CTGCACCGGT TGTCGGTGTT CTCCACCTGG
TACCTGGAGG CCGCGGAGGA CGTCTGCTCG GGCGAGGGGG TCGATCCCGC CGACATCCTG
CCGCTGCACT TCTCCCTGCT GGACAAGTCG CTGGTGGTGA TGGACGCCGA GGTCGACGGC
ACCACCCACT ACCGGCTGAC CGAGACGGTG CGCGCCTACG CCGCCGAGCA CCTGGCCGAC
AGCGGCGGCG AGGACGACCG GTGGGAACGC TACCTGCGCT TCTGCGTCGC CCGTCTGGAG
GAGTGGGCCA AGAGCTGCTG CGCGCCGATG CCGTGGGGGG AGCGCCTGGG GCACCTGCGG
CTGCTCGACC ACCACCGGGA GAACCACGCC CGTGTGGTGG ACTGGGCGCT CTCGCGCGGA
CGCGTGGACG AGGCCCTGCG GGTGTGCGTG GCGCTGCGCT CCTACTGGAT CGTGCGCGAC
CTGGCCGCCG AGGGCAGCCG CCTCCTGGAG CGGGCGCTGT CCACCGACTC CGACGCGCAG
TCCCCCCACC TGCGGGCGCG CGCCCTGGCC CTGCACGCCG AGCTGCGGCT GGACCTGGAC
GCGGCGCCGC GCGTGTCCAC CCTGGCCCTG TGCGCCCTGG AGTCGGCGCG GGCCTGCCGT
GAGGCGGGAG CCGCCGCCTC CGCGCTGGCC ACCCTGGCGG CGCTGTGCCT GCGCACCGGC
ACCCTGGACG AGGGCCAGGA GCACGCCGAG CGGGCCGGGG TGTGGGCCTC CCAGGTCAGC
GACCCCATCA CCGAGGCGGC CACGCTGGAC GTGCTGGCCC AGCTGGCCCG CCGCCGCGGC
GAGGCCGAAC GGGCCACGGC CCTGCTGGAG CACAGCGTCG CGGTGGCCGA CAACCTCGGC
GACCGCTGGA GCGCGGCCCG CGCCCTGCAC GGGCTGGGCT CGATCGCCGC CGAGCGCGGC
GACTTCACGC GGGCGCGGGA GCTGTTCTCC GACGCCCTGT CGGTCTTCGG CGAGCTGGAG
GCCGCCCCGG CCACCGCGCA CTGCGCCCGG GAGCTGGGCC GCCTGTACCT GGCCGAGGGC
GAGACGCTGC TCGCCCGGGA GCCCCTGGCG ACGTGCCTGC GGGTGAGCTT CACCTCCGGC
CGCAGGCTCG CGGTGGCCCG GGCCCTGGAG GCGCTGGCGG AGCTGGCCCT GGCCGAGGAG
GAGGCCGAGC GGGCCGCCGC CCTGGTGGGG GTGGCCGCCG ATCTGAGGGC GGCGCTGGAC
CGCCCCTCGG CCGAGACGCT GCGGCTGCGG TCGGCGGCGG AGCGGCGCGT GGGCGCCACG
CGCACCGCCG AGGCGTGGAA CGCGTGGCGC CCCCTGCCGC TGGAGCAGGT GCTCGACCGC
GCGCTGGCCT TCCCCCGGCC GCAGTCCTCG GGGCCCTCGG GCCCGGATTC GCTGACCCCC
CGGGAGAGGG AGGTGGCCGA ACTGGCCGAA GAGGGCCTGT CCAACCGCGA GATCGCCGAG
CGGCTGACCA TCAGCCACGC GACGGCGGCC CGCCACATCG CGAACATCTT CAGAAAACTC
TCGATTTCCT CCAGGACGCA GTTGACCGGC TGGGCCGTCC CGGGTGACGG TGGCTGA
|
|---|
| Protein sequence | MSPPRHNLPL SAGEFISFVG RERDIVDLGR LLGTARMVTL TGTGGIGKTR LALHLAERVM
RRFPDGVRFV DLSEASTHDQ ALRAVAGSLQ AVQDDSRTMT DAVITSLRTR NLLLLLDTCE
HAVGPMAQLC QAVLRDCPRV RILVTSRQPL HVPEENIWRV PPLSLPARPT PTDPYAADPA
PIPRRDTQRY ESVRLFVTRA HAARAGFEMT RENSGYIAEI CRMLDGMPLA IELAAARVRV
LSVQQILRRL DDRFQLLTSD GSEDLPPRQR TLRAVLEWSH ELLTEPERLL LHRLSVFSTW
YLEAAEDVCS GEGVDPADIL PLHFSLLDKS LVVMDAEVDG TTHYRLTETV RAYAAEHLAD
SGGEDDRWER YLRFCVARLE EWAKSCCAPM PWGERLGHLR LLDHHRENHA RVVDWALSRG
RVDEALRVCV ALRSYWIVRD LAAEGSRLLE RALSTDSDAQ SPHLRARALA LHAELRLDLD
AAPRVSTLAL CALESARACR EAGAAASALA TLAALCLRTG TLDEGQEHAE RAGVWASQVS
DPITEAATLD VLAQLARRRG EAERATALLE HSVAVADNLG DRWSAARALH GLGSIAAERG
DFTRARELFS DALSVFGELE AAPATAHCAR ELGRLYLAEG ETLLAREPLA TCLRVSFTSG
RRLAVARALE ALAELALAEE EAERAAALVG VAADLRAALD RPSAETLRLR SAAERRVGAT
RTAEAWNAWR PLPLEQVLDR ALAFPRPQSS GPSGPDSLTP REREVAELAE EGLSNREIAE
RLTISHATAA RHIANIFRKL SISSRTQLTG WAVPGDGG
|
|---|
| |