| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_0893 |
|---|
| Symbol | |
|---|
| ID | 9244738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 1093795 |
|---|
| End bp | 1095243 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/ D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_003678843 |
|---|
| Protein GI | 297559869 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGCGC TCACGCTCGA TCGGATCGCT GAGATCACCC AAACCGCCAT CGGCGGATCA
GCGCGCCCCG AAGCCGTCGT CGACGGCCCC GTCGTCATCG ATTCGCGGCA GGCAGTGCCC
GGCGCGCTCT TCGTCGCCCT GGGCGGCGAA CGCGTGGACG GACACGACTT CGCGGCCTCC
GCGGTCGCGG ACGGAGCGGC GGCGGCCCTG GTCTCCCGAC CCGTCGACGC CCCCCACCTG
CTGGCGGAGG GCGGCGACGA GGGAGTCGTC GCGGCCCTGA CGCGGCTGGC CCGGCACGTG
GCACGAGAAC TCAGCGATCC CCGCCGCGGA GCGGAGCGCG CCGAGGTCGT CGCGGTCACC
GGATCCTCCG GCAAGACCAC GACCAAGGAC CTCATCGCGC AGGTCGTGGC CCGCATGGGC
CCGACCGTCG CCCCGGCGGG CTCGTTCAAC AACGAGATCG GTCACCCCCT CACCGTGCTG
CGCGCCGACA CCGGCACCCG CTACCTGGTC CTGGAAGCCG CCGCCCGGGG TATCGGGCAC
ATCGCCCACC TGTGCGGGGT GGCCCCGCCC CGGATCGGCG TGGTCCTCAA CGTCGGCAGC
GCCCACATGG GGGAGTTCGG CGACCGCGAC GCCATCGCCA AGGCCAAGGG CGAGCTGGTC
GAGGCGCTCC CGCCGGGAGC CGCGGACAGG GGCGCGGGAG GCGTCGCCGT CCTCAACGCC
GACGACCCGC GCGTGAACGC CATGGCCGCG CGCACCCGTG CGCGCGTGGT CACCTACGGA
CTGGGGGAGG ACGCCACCGT GCGCGCCACG GACGTGGTCA TGCGCGAGAC GGGCGCCCCC
TCCTTCACCC TCCACCTGGC CGGGCGCACC GCCCGGGTGG AACTGGCCCT CGTCGGCGCC
CACCAGGTCC ACAACGCGCT GGCCGCCGCC GCGGTCGCCG ACGAACTGGG CATGGGCGTG
GACGAGATCG CCGAGGCGCT CGGCGCCGCC ACACCGGTCA GCCGGTGGCG CATGGAGGTC
ACCGAGCACG CCGGCGCCAC CCTCGTCAAC GACGCCTACA ACGCCAACCC CGAGTCCATG
CGGGCGGCGC TGACCACCCT GGGCGCCCTC GCCCGGGACC GCCGCTCCAT CGCCGTCCTG
GCCCACATGG CCGAGCTCGG CGAGGGCGGC GGGGTCGAGC ACGAGAGGAT CGGTGAGCTC
GCGGCCCGCA CGGGCGTGGC CCACCTGGTC GTGGTCGGTG AGGCGGCCGA GGGCATCGCC
GTCGGCGCCG AGGGCGCCGC GCGGCAGGGA CTGTGGCAGG GCGAGTGCGT CCGCGTGGCG
GACGTTCACG AGGCCGCCGC GGCCGTGCGC GCGCGGATGC GCACAGGAGA CGTCGTCATT
GTGAAGGGAT CACGCGTGGC AGGGCTCGAA AGGGTTATCG ACCTCATCAC GGAGGGTGAC
GCCCAGTGA
|
|---|
| Protein sequence | MIALTLDRIA EITQTAIGGS ARPEAVVDGP VVIDSRQAVP GALFVALGGE RVDGHDFAAS
AVADGAAAAL VSRPVDAPHL LAEGGDEGVV AALTRLARHV ARELSDPRRG AERAEVVAVT
GSSGKTTTKD LIAQVVARMG PTVAPAGSFN NEIGHPLTVL RADTGTRYLV LEAAARGIGH
IAHLCGVAPP RIGVVLNVGS AHMGEFGDRD AIAKAKGELV EALPPGAADR GAGGVAVLNA
DDPRVNAMAA RTRARVVTYG LGEDATVRAT DVVMRETGAP SFTLHLAGRT ARVELALVGA
HQVHNALAAA AVADELGMGV DEIAEALGAA TPVSRWRMEV TEHAGATLVN DAYNANPESM
RAALTTLGAL ARDRRSIAVL AHMAELGEGG GVEHERIGEL AARTGVAHLV VVGEAAEGIA
VGAEGAARQG LWQGECVRVA DVHEAAAAVR ARMRTGDVVI VKGSRVAGLE RVIDLITEGD
AQ
|
|---|
| |