| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_0452 |
|---|
| Symbol | |
|---|
| ID | 9244291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 544790 |
|---|
| End bp | 546157 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | type III effector Hrp-dependent outers |
|---|
| Protein accession | YP_003678405 |
|---|
| Protein GI | 297559431 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.869243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.195749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCAGG TCCTCGTGGT CGCCGACGAA CTCACCGGTG CCAACGCCAC CGGTGCCCGG
TTCGCCCGTA CCGGGATGCG TGTGGCCACG GTGACTCCCG AGCACGTGAG CCGAGTCGTG
GGGGACTACG ACGTGGTCGT GGCCAACCTG GACAGCCGCC ATGTTCCCCC CGAGCACGCC
GCAGACCTGG TCACGGACGT GGTCGAAGCG GTGTGGCCGG TGGGGCTGGT GGTCAAGCGG
ACCGATTCCA CGCTGCGCGG CAACATCGGT GCCGAACTGG AGGCCACCTA CGACGCCGTG
CGCGAGCGCG TACCCGCCGG AACACGGGTG CGGGTGCTGT TCGTTCCGGC CTTCCCGAGT
TCGGGGCGCA TCACCGAGGA CGGGTTGCAG TTCCTCAACG GGGTGCCGCT GGAGCGCACC
GAGCTGGCCG ACGATCCGCT GTGCCCGATG ACCACCAGTT CCGTCGCCGA CATCCTCGCC
GTCCAGACCG ACCTTCCGGT GCGCCACGTG CCCGTGCGGC AGGTGACGCA GACGATGCTC
ACCGCCGAAC TGCTCGCCGG TGACGAGCCC GTGGTCGTGT GCGACGCGAG CACCGAGCAG
CACCTGACCG ACATCGCCGA GGCCGCGGCC GCCGCGCACC ACGACACGGG GATCGTGTGG
CTGGCTGCCG ACCCCGGGCC CACGGGGGCG CTGTTGGCCT ACGCGCTGCG GTTGAGGGGC
CAGGCGGGTT CGCGCGGGCC GCTGCTGGGG GTGGTGGGCA GCACCACCGA GCTGACCCGG
CGGCAGTTGG CCACCGTCGC GCGCACGGGC GCGGTGCGGT TCGTGGACCT GGACGCGGTG
GAGTTCAGCG TGGGGGACCG CGCGGACGAG GTCGCCGAGC AGACCGCGCG GGAACTGTCC
GAGCAGCTGA CCTCCTCGGG CTTTCCGGAA CTGTGCGTGC TGCGGGTGGT GACGCCCTCC
GACCGGGTGC GCGAGCTGCC AGTCCAGGTC CGCGCGGAAC TGCCCGGCCG GATCGCGCGG
CTGGTGGCGG ACGTGGTCAA CGAGGTCGCC GACACCACGG GGGCGCACGC GCTGCCCAGC
GGGCTGTACC TGACCGGCGG GGACCTGGTG GCGAGCCTGT TGGACGAGCT GGACGTGCAC
GCGTTCGATG TCGGGGGCGA GATCGTTCCG CTGACGGTGC ACGGCCACCT GAGCGGGGGA
CCGCTGGACG GAACACCGGT GGTGGCCAAG GGGGGTCTGG TCGGGGACGA CATCACCCTG
GTGGAGTGCC TGACGAAGCT CCGGCGGGCG GTGCAGACCC GGTTGCACCA GGTGCACTCG
GAGGTGTCGG AGCACGTGGT GCCGACGCCG CTGCGCGACA CGGTCTGA
|
|---|
| Protein sequence | MAQVLVVADE LTGANATGAR FARTGMRVAT VTPEHVSRVV GDYDVVVANL DSRHVPPEHA
ADLVTDVVEA VWPVGLVVKR TDSTLRGNIG AELEATYDAV RERVPAGTRV RVLFVPAFPS
SGRITEDGLQ FLNGVPLERT ELADDPLCPM TTSSVADILA VQTDLPVRHV PVRQVTQTML
TAELLAGDEP VVVCDASTEQ HLTDIAEAAA AAHHDTGIVW LAADPGPTGA LLAYALRLRG
QAGSRGPLLG VVGSTTELTR RQLATVARTG AVRFVDLDAV EFSVGDRADE VAEQTARELS
EQLTSSGFPE LCVLRVVTPS DRVRELPVQV RAELPGRIAR LVADVVNEVA DTTGAHALPS
GLYLTGGDLV ASLLDELDVH AFDVGGEIVP LTVHGHLSGG PLDGTPVVAK GGLVGDDITL
VECLTKLRRA VQTRLHQVHS EVSEHVVPTP LRDTV
|
|---|
| |