Gene Ndas_0216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_0216 
Symbol 
ID9244050 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014210 
Strand
Start bp267652 
End bp271197 
Gene Length3546 bp 
Protein Length1181 aa 
Translation table11 
GC content75% 
IMG OID 
Productchromosome segregation protein SMC 
Protein accessionYP_003678172 
Protein GI297559198 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTACCTGA AGAATCTGAC GCTGCGCGGC TTCAAGTCGT TCGCGTCGGC CACCACCTTG 
CGTTTCGAGC CCGGGATCAC CTGTGTGGTC GGTCCCAACG GCTCGGGCAA GTCCAACGTG
GTGGACGCCC TGTCCTGGGT GATGGGGGAG CAGGGGGCCA AGTCCCTGCG CGGCGGCAAG
ATGGAGGACG TCATCTTCGC GGGCACCTCC ACCCGCCAGG CGCTGGGCCG CGCCGAGGTC
AGCCTCACCA TCGACAACAC CGACGGTGCG CTGCCCATCG ACTACACCGA GGTCACCATC
CGGCGGACCA TGTTCCGCAA CGGCGGCTCG GAGTACGCCA TCAACGGCGA CACCTGCCGT
CTCCTGGACA TCCAGGACCT GCTCAGCGAC TCCGGCATCG GCCGTGAGAT GCACGTCATC
GTCGGCCAGG GGCAGCTGGA CACCGTCCTG CACGCCGGTC CCGAGGAGCG CCGCGCCCTC
ATTGAGGAGG CCGCGGGCAT CCTCAAGCAC CGCAAGCGCA AAGAGAAGGC GATCCGCAAG
CTCAACGCGA TGCAGGGCAA CCTGGACCGG GTCACCGACC TCACCGCGGA GCTGCGCCGC
CAGCTCAAGC CCCTGGGCCG CCAGGCGGAG CTGGCCCGCA GGGCCGCCGT CATCCAGGCC
GACCTGCGCG ACGCCCGCCT GCGCCTGCTC GCCGACGACA TCGTCACGCT CACCGGTCAG
CTGGCCAAGG AGGAGGCGGA CGAGAAGGAG GTCCTCGCCC GCCGCGGGGC CGCCGAGGCC
GCCCTCACCC AGACCCAGGA GCGCGAGACC GAGCTGGAGG CGCAGGCCGC CGAGGCCGCG
CCCGCCCTGG CCCGCGCCCT GGAGACCTAC CACGCGCTGT CGCGCCTGAC CGAGCGCCTG
GACGCCGTGC GCGGCCTGGC CAACGAGCGC CACCGCAACC TGGCCTCCGT CTCCGACGAG
CCCGTCCACC GCCGCGACCC CGAGGAACTG GAGATGGAGG CCGAGGAGGC CGCCGCCCAG
GAGGAGGAGC TGCTCACCCG GCTGGAGGAG GCCCGCGAGG CCCTGGAGGC CACCGTCATC
GAGCGCTCCG CCGCCGAGGA CGCCCTGCAC CGCGAGGAGA AGCGGCTGGA GGCCGCCAAC
CGCGCCTCCG CCGAGCGCAG GGAGGGCCTC GTGCGGCTGT CCGCGCGGGT GGAGAGCCTG
CGCGGCCGAC TGGCCTCGAA CGGGGACGAG ATCACCCGGC TGGAGGAGTC CGCCCGCCAG
GCCGCCGAAC GCGCGGAGCG GGCCCAGGCC GAGTACGAGA TGGCCGCCGA GGAGGCGGCC
GGTCTCGACG AGGGCGACGC CGAACTCGAC GCCGCCCAGG AGGAGGCGGC CCGCCGCCTG
TCCGAGGCCG ACGCCGGGAT CAACCGGCTG CGCGACGCCG AGCGCACCGC CGAGGGGGAG
CGGGCCGCGC TCGCCGCGCG CAAGGAGGCT CTGGAGCTGG GGCTGGCGCA CAAGGACGGC
GCCGGCACCC TCCTGGGCGC CGACCTGCCG GGGATGCTCG GCAGCCTCGC CGCCCTCGTC
CAGGTCGAGT CCGGTCAGGA GACCGCCGTG GCCGCGGCCT TCGGCACGGC CGCGGGAGCG
GTCGCGGTCA GCGACCCCGA CACCGCCGTG GCCGCGCTCG ACCTGCTCCG GTCCGAGGAC
GCCGGCCGTG CCGGGATCGT CATCGCCCAG GCGGTCCCCG CGGTGCCCCG CGGGGAGTGG
CCCGTGCTGC CCTCCGGGGT CCGCTACGCC CTCGACGCCG TCGTCGCCCC CGAACACCTG
GCCGGAGCGG TCACCGCCCT GCTGGACCGC ACCGCGCTGG CGGCCGACGC CCACGCCGCC
CGCGACCTGG TCCGCAAGGT CCCCGGCGTG CGCGCCGTCA CCCCCGAGGG GGACGTGTTC
TCCGCCGCGC TGGTGCACGG CGGTTCGGCC GCCGCGCCGA GCCTGCTGGA GGTCCAGGCG
GCCGTGGACG AGGCGGCCGG GAGGCTGGAG ACGGCCACCG AGGCCGCCGG ACGGATCGCC
GCCGAGCTGG AGGAGCGCAG GCGCGAGCGC GCCGACCTGG CAGCCGAGGT CGAGGAGCTG
ACCGCGCGCC GCCGCCAGGG CGACCGCAGG CGCAACGAGT CCGCGCAGCG CTTGGGCAAG
CTGGGCGGGC AGGCCCGTTC CGCCGAGGCC GAGTCCGAGC GGTGCGCGGC CGCCGCCGCC
AAGGCCGCCG CCGCGCGCGG CGAGGAGGCC GCCAAGCTGG AGCGGCTGGA GGAGGAGCTG
GCCGAGGCCG AGGAGGTGGC CGCCTCCATC GAGGAGGACG CGCCCGACCC CGAGACCCGC
GACGAGCTCG CCGCCCAGGC CTCGCGGGCC CGGGCCACGG AGATGGAGCG CCGCCTGTCG
GTGCGCACCG CCGAGGAGCG CGCCCGCTCG ATCGAGGGCC GCGCCGAGCG GTTGCGCGCC
CAGGCCTTCG AGGAGCGCCG CGCCATGGAG CGCGCCGCCG AGCGCCGACG CACCCGCGCC
GCGCAGGCCA CCATCGCCGA GGCCGCCGCC GAGGGCGCCC GCCTGGCCCT GGAGCGGATC
GCGGTGTCCC TGGCCGCGGC CGAGGCCGAG CGCACCGCCG CCGAGGCGGA CAAGGAGGCG
CGCGACGCCG AGCTGCGGAC CGTGCGCGCC CGCGTCCGCG AGCTGTCCGT CGACCTGGAG
AAGCTGACCA GTTCGGCGCA CAGCGGCGAG GTGGCCCGGG CCGAGCGCCG CCTGCGCCTG
GAGCAGCTGG AGGTCAGGGC GAGCGAGGAG ATGGGCGTCG ACGTGCCCAC CCTCGTCGCC
GAGTACGGGC CGAACGTGCC CGTGCCCCCT CCGGGCGACG CCGAGGAGGA CGCGGTCCCG
CTGCCGTACG TGCGCGAGGT GCAGGCCAAG CGGGCCAAGG CCGCCGAGCG CCAGCTCAAC
CAGCTGGGCA AGATCAACCC GCTCGCGCTG GAGGAGTTCG CGGCGCTGGA GGAGCGGCAC
GCCTTCCTCA ACGCCCAGCT GGAGGACCTC AAGAAGACCC GCCGGGACCT GATGGACATC
GTCCAGGAGG TCGACGCCCG GGTGCAGGAG GTGTTCTCCT CCGCCTACCT GGACGTGGAG
CGGGAGTTCG CGGCGATCTT CGGGCGGCTC TTCCCCGGGG GCGAGGGGCG GCTGCTGCTC
ACCTCGCCCG AGGACATGCT GACCACCGGT GTGGAGGTGG AGGCCCGTCC GCCCGGCAAG
AAGGTCAAGC GCCTGTCCCT GCTCTCCGGC GGCGAGCGCT CCCTGACCGC GGTGGCCTTC
CTGGCCGCGA TCTTCAAGGC CCGGCCGTCC CCGTTCTACG TGATGGACGA GGTCGAGGCG
GCCCTGGACG ACACCAACCT CCAGCGCCTG CTGGTGATCT TCGAGGAGCT GCGGGCCGCC
TCGCAGCTGA TCGTGATCAC CCACCAGAAG CGCACCATGG AGGCGGCCGA CGCGCTGTAC
GGCGTGACGA TGCAGGGTGA CGGCATCTCC CAGGTGATCA GCCAGAAGCT GGAGCGCCCC
GCCTGA
 
Protein sequence
MYLKNLTLRG FKSFASATTL RFEPGITCVV GPNGSGKSNV VDALSWVMGE QGAKSLRGGK 
MEDVIFAGTS TRQALGRAEV SLTIDNTDGA LPIDYTEVTI RRTMFRNGGS EYAINGDTCR
LLDIQDLLSD SGIGREMHVI VGQGQLDTVL HAGPEERRAL IEEAAGILKH RKRKEKAIRK
LNAMQGNLDR VTDLTAELRR QLKPLGRQAE LARRAAVIQA DLRDARLRLL ADDIVTLTGQ
LAKEEADEKE VLARRGAAEA ALTQTQERET ELEAQAAEAA PALARALETY HALSRLTERL
DAVRGLANER HRNLASVSDE PVHRRDPEEL EMEAEEAAAQ EEELLTRLEE AREALEATVI
ERSAAEDALH REEKRLEAAN RASAERREGL VRLSARVESL RGRLASNGDE ITRLEESARQ
AAERAERAQA EYEMAAEEAA GLDEGDAELD AAQEEAARRL SEADAGINRL RDAERTAEGE
RAALAARKEA LELGLAHKDG AGTLLGADLP GMLGSLAALV QVESGQETAV AAAFGTAAGA
VAVSDPDTAV AALDLLRSED AGRAGIVIAQ AVPAVPRGEW PVLPSGVRYA LDAVVAPEHL
AGAVTALLDR TALAADAHAA RDLVRKVPGV RAVTPEGDVF SAALVHGGSA AAPSLLEVQA
AVDEAAGRLE TATEAAGRIA AELEERRRER ADLAAEVEEL TARRRQGDRR RNESAQRLGK
LGGQARSAEA ESERCAAAAA KAAAARGEEA AKLERLEEEL AEAEEVAASI EEDAPDPETR
DELAAQASRA RATEMERRLS VRTAEERARS IEGRAERLRA QAFEERRAME RAAERRRTRA
AQATIAEAAA EGARLALERI AVSLAAAEAE RTAAEADKEA RDAELRTVRA RVRELSVDLE
KLTSSAHSGE VARAERRLRL EQLEVRASEE MGVDVPTLVA EYGPNVPVPP PGDAEEDAVP
LPYVREVQAK RAKAAERQLN QLGKINPLAL EEFAALEERH AFLNAQLEDL KKTRRDLMDI
VQEVDARVQE VFSSAYLDVE REFAAIFGRL FPGGEGRLLL TSPEDMLTTG VEVEARPPGK
KVKRLSLLSG GERSLTAVAF LAAIFKARPS PFYVMDEVEA ALDDTNLQRL LVIFEELRAA
SQLIVITHQK RTMEAADALY GVTMQGDGIS QVISQKLERP A