| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_5213 |
|---|
| Symbol | |
|---|
| ID | 8450844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 5809790 |
|---|
| End bp | 5812393 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 645044244 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003204468 |
|---|
| Protein GI | 258655312 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGTCG CGAATTACTC TCGACGGGTG AAACTGGTCG AAAGGGACCA TCCGTTCGAT
GTCCTGCGGA TGGCCATGGT GACCGCGGCG GCCGGGGAGG GCGCCGGTGT CGCGGTGGCC
GGCGAACCCG GCATCGGCAA ATCGGCCCTG ATCGCGGCGG CCTGCCGGGA AGGCTCCGGC
ATCCGCGTCC TGCGGGCCAG CTGTGATCCG CTGAGCACAC CCCGCCCGCT GGGACCGTTC
CGTGATCTGG CCGGCGAGGC TGGGTTCTCG GCCGACCTCG CGCGCGAGCC GATGCTGTCC
GAGATCTGCG AGCTGGTCTT CCGCGCCTTG CGGGCGGAGC CGACCATTCT GGTGATCGAG
GATCTGCACT GGATCGACGC CGCCTCGGTC GACGTGCTGC GCTTTCTGGC CCGGCGGGTG
CCCTCCATGC CGGTCGCGCT GCTGGTCAGT TACCGGGACC ACGAGATCGG CCCCGGGCAC
TCGGCGCGAG TGCTGCTGGA CGACTTCGCC CGGCTGGAAC AGCTCACGAC CGTGCGCCTG
GCGGCCCTGA CGGTGGCGGG CGTCGGCGAG CTGCTTCGCT CGACCGCCCT GGACCCGGTC
CGGGTGCACA CGCTGACCGG GGGCAACCCG TTCTTCGTCA CCGAAGTGGT CAAAGAGCCC
GACCTGCCCT TGCCGACTTC GGTCCGGGAC GCGGTACTCG CCCGGACCGT GCCGGTCAGC
CCGACGGACG TCGAGGTGCT GCAGCTGGTC GCCTGCGCGC CGGATCGGCT CGACGATCGC
GCCCTGCCCG CCCTGGGCGT GGACCTGCCC ACCCTGCGCC GGCTGGACCG CACCGGCCTG
CTGATCCGCA GCCGGGACGG GCTGGTCTTC CGTCACGAAC TGGCCCGCCA GGCCGTGGAG
AGCACCATTC CCCCGGGCGG AGCGCCGCAG CTGCACGCGC GGCTGCTCGC GGCCCTGGAG
CAGATCGACC CACCCGACCC GGCAGTGCTC ACGCACCACG CGGTCGGCGC CCGAGACTCC
GCCCGGGCCA CCCGGTACGC CCGCGCGGCG GCCCAACAAG CCACGAGCGC CGGCTCCCAC
ACCGAGGCGG TGGCTTTCTA TCGCACCGCC CTGACCCACC TGGTCGGGGC ATCGGCCGGC
GAGCGCGCCG ATCTGCTGCT GCATCTGGGC TTCGAGGAGT ACATGACCAA TCGCCTGAAC
GCGGCGATCC GGACGGTCAG TGCGACCTTC CCCCTGTGGC AGGAGGCCGC CGACCCACGT
GGGCTGGCCA CCGCCCACGA GGAGGTCGCC GTGTTCGAGT ACTACAACGC CCGCCGCCGG
CAGGCCGAGG AACATGCGGA ACGGGCCTGC GCCATCGCCG GCGAAGCCGG TCCCGAGCTG
ACGTTCGGGC AGGCCCGGGC GACTCGCGGC TACCTGGCCT ACATGCGCAA CGACTTCGAC
CTCGCGCTGG CCTGTCACGA CGACGCCGGC CGCATTGCCG AGACCGGCCA GGACCAACCA
CTGGCCATCC GCACCCGCCT GGTCCGAGCC GCGGCCGCTC TGTCCGGCGG TGACGAGTCG
GCGCGCGCCT CGCTCGCGCA GCTGATCGAG GCGGCCCGGA ACCACAACCT GGACGAGCTC
GCCTCGACCG GCTACTCCAA CCTGGCCAAC CTCGATGTCG AACAGCGCCG GCTGCGGGAT
GCGCAACACG TCCTGGAACA GTCCCTGCCG TTCACCGACG AACGCGACAT CCCGATCTGC
CGGCAGTGGC AGACCGGCGT CCGGTCCCGG TTGCACTTCG CCCGCGGGCG CTTCAGCGCC
GCACTCGAAG ACGCCGACTT CGTCCTGCAC GGTGACGGCA TGCCGTTGGC GACCGTCTGG
CCGCTGCTGG TGACGGCGCT GGCCCCGCTC CGGCAGGGCA CCGTCCGGCC CACTCCCGAT
CCGTTGGACG CGGCCTGGGA CCTGGTCGGC CGCATCGACG AGCCACTGCG CCGATCGGCC
GTGTTCTCGG CGCTGGCCGA ACGGATGTGG ATGACCGGAG TGCCCGATGA CCGGGTCATT
CAGGACGCCC CCGGCGAGCT CGCCCGGCTC CTCGATGTGC CCGGAACCTC CTGGGCCGCA
GGTGATCTCG CCGTGTGGCT GGCGCGGTTG GGCTTGCTCG CCGATCCGAC GGTCACCGTG
GCCGAGCCGT TCGCGCTGAC CTTGGTCGGC CAATGGGACC GCGCGGCGCG GTGGTGGCAC
CGCGCCGGCG AGTCCTTCGC CGAGGCGATG GCCTGGGCCG ACTCCCCCAT CACCGCCGAC
CGGGTCCGGG CCGTCGAACT GCTCGACGCC CTGGGCGCCG TCGGCTCCGC CGACCGGCTC
CGGTCCGGCC TGCGCCGCGA CGGGGTGGTT GCCGTCCCGC CCCGGCCCCG GGCCGCCACC
CGGGCCAATC CCGCCGGGTT GACCAACCGC CAGCTCGATG TCGCCAAGCT GGTCGCCCGC
GGGTTCACCA ACGCCGAGAT CGCCGACCGG CTCTTCATCT CGACGAAGAC GGCTGACCAT
CACGTGTCCG CGGTGTTGGC CAAGCTGGGC GTGGGCAACC GGCGCGCGGT CGTCGTCCAG
GCCGACGAAC TCGGGCTCGG CTGA
|
|---|
| Protein sequence | MAVANYSRRV KLVERDHPFD VLRMAMVTAA AGEGAGVAVA GEPGIGKSAL IAAACREGSG
IRVLRASCDP LSTPRPLGPF RDLAGEAGFS ADLAREPMLS EICELVFRAL RAEPTILVIE
DLHWIDAASV DVLRFLARRV PSMPVALLVS YRDHEIGPGH SARVLLDDFA RLEQLTTVRL
AALTVAGVGE LLRSTALDPV RVHTLTGGNP FFVTEVVKEP DLPLPTSVRD AVLARTVPVS
PTDVEVLQLV ACAPDRLDDR ALPALGVDLP TLRRLDRTGL LIRSRDGLVF RHELARQAVE
STIPPGGAPQ LHARLLAALE QIDPPDPAVL THHAVGARDS ARATRYARAA AQQATSAGSH
TEAVAFYRTA LTHLVGASAG ERADLLLHLG FEEYMTNRLN AAIRTVSATF PLWQEAADPR
GLATAHEEVA VFEYYNARRR QAEEHAERAC AIAGEAGPEL TFGQARATRG YLAYMRNDFD
LALACHDDAG RIAETGQDQP LAIRTRLVRA AAALSGGDES ARASLAQLIE AARNHNLDEL
ASTGYSNLAN LDVEQRRLRD AQHVLEQSLP FTDERDIPIC RQWQTGVRSR LHFARGRFSA
ALEDADFVLH GDGMPLATVW PLLVTALAPL RQGTVRPTPD PLDAAWDLVG RIDEPLRRSA
VFSALAERMW MTGVPDDRVI QDAPGELARL LDVPGTSWAA GDLAVWLARL GLLADPTVTV
AEPFALTLVG QWDRAARWWH RAGESFAEAM AWADSPITAD RVRAVELLDA LGAVGSADRL
RSGLRRDGVV AVPPRPRAAT RANPAGLTNR QLDVAKLVAR GFTNAEIADR LFISTKTADH
HVSAVLAKLG VGNRRAVVVQ ADELGLG
|
|---|
| |