| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4720 |
|---|
| Symbol | |
|---|
| ID | 8450350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 5253970 |
|---|
| End bp | 5255787 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645043760 |
|---|
| Product | Poly-beta-hydroxybutyrate polymerase domain protein |
|---|
| Protein accession | YP_003203985 |
|---|
| Protein GI | 258654829 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
|---|
| TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I
[TIGR01839] poly(R)-hydroxyalkanoic acid synthase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTG CGGAGACCAA GCCGCTGGAC CTTTCCTGGG ACGAGGTGGG ACCCAAGCCG
CGGCCGGAGC CGACCGTGGA GGCCTCCGCG TGGGATGAGC TGGACAAGCG GGTGCGGGCC
AGCATCTCGG AGGTGCTCAA CCGGGCCGAG AAGCAGTTCT CCACCACCCC GCTGGGTCGC
ATGGACGCGG TCGCCGCGAT CCCCGCCTTC ACCCGCACCG CGATGGCCCT GGCCAGCGAG
CCCAACCTCG CGCTGCAGGT CGGCACCCGG TACGTCACCG GCATCCTGCG GGCCTGGGCC
ACCGCCGGTG CGCGGTCGGT CGGCGCCAAG GTCGACGGCC CGATCGAGGA GAAGAAGGAC
AAGCGGTTCG CCGACCCGAC CTGGAAGGAC AACGCCGCGT TCTGGCTGCT CCGGCAGGAG
TACGAACTGT GGGAGCAGGC GCTGGAGGAC CTGGTCGAAA GCGCCCCGAT CAGTGACGAA
CTGCGGGTCA AGGTCTCGTT CCTGACCCAG GCCATCACCG ACGCCATGTC TCCGACCAAC
TCGTTCCTGA CCAACCCGGA TGCCGTCCGC CGGGCCGTCG AGACCGGTGG CGTGTCGGTC
TACAAGGGTG CGCAGAACTT CCTGCACGAC CTGGCCGAGA ACAACGGGAT GCCCCAGCAG
TACCAGAAGG GCGTCTACGA GGTCGGCCAG AACCTGGCCG TCACCCCCGG CAAGGTGGTC
TTCCGCAACG AGCTGATGGA GCTGATCCAG TACAGCCCGA CCACCGAGCA GGTGTACGAG
ATTCCCCTGC TGTTCAGCCC GCCGTGGATC AACAAGTACT ACATCATGGA TCTCTCGCCG
GGCCGCAGCC TGGTCCAGTG GGCGGTCGAC CACGGCCACA CCGTGTTCCT GATCAGCTAC
CGGAACCCGG ACGAGTCGAT GCGCTCGGTC GGCATGAACG ACTACCTGCT CGACGGGCCG
ATCACCGCGC TGGACGTGAT CCGGGACATC ACCGGCCAGG AGAAGTGCAA CCTGCTGGGT
CTGTGTCTGG GCGGCACCCT GACCATGATC TCGCTGACCT ACCTGGATGC CATCGGCAAG
GATCGGATCA ACAGCGCGAC GTTCCTGAAC ACGCTGACCG ACTTCTCCCA GCCGGGCGCC
CTGGGCGTGT TCACCGACGA GGTGAGCGTG ACCAAGCTCG AGGAGCAGAT GAACCAGACC
GGGTTCCTGC CGGCCGACAA CATGGCCAAG ACGTTCAACC TGATGCGCGG GAACGACCTC
ATCTGGCACT ACGTGGTCAA CAACTGGATG AAGGGCGAGC AGCCGCCGGC CTTCGACCTG
CTCACCTGGA ACGCGGACTC CACCCGGATG CCCGCCGTCA TGCACGCGTT CTACCTGCGC
TCCTGCTATC TGAAGAATCA GCTGGCCAAG GGTGTGATGG AGATCGCCGG TGAGACGCTG
AACATGAAAT CGGTCGATCA GGACCTTTAC TTCCTGGCCG CCGAGCAGGA CCACATCGCG
CCCTGGCGCA GCTCGTACAA GGGCGCGCTG ATCCCGACCG GCAACGTCCG GTTCGTGCTG
TCCAACTCCG GCCACATCGC CGGGATCGTC AACCCGCCCA ACCCCAAGTC CAAGCATTGG
GCCGCTGACC TGGACGAACT CCCGGAGAAC CCGGACGAGT GGCTGGCCTC GGCCACCATG
AAGCCGATCA CCTGGTGGGA GGACTGGGCC ACCTGGATCT CCGAGCGGGC CGGCAAGAAG
ATCGCGCCGC CGCCGATGGG TGGCGACACG CACCCTCCGT TGGAGGATGC GCCCGGGTCC
TACGTGTTCG GCAAGTAG
|
|---|
| Protein sequence | MTTAETKPLD LSWDEVGPKP RPEPTVEASA WDELDKRVRA SISEVLNRAE KQFSTTPLGR
MDAVAAIPAF TRTAMALASE PNLALQVGTR YVTGILRAWA TAGARSVGAK VDGPIEEKKD
KRFADPTWKD NAAFWLLRQE YELWEQALED LVESAPISDE LRVKVSFLTQ AITDAMSPTN
SFLTNPDAVR RAVETGGVSV YKGAQNFLHD LAENNGMPQQ YQKGVYEVGQ NLAVTPGKVV
FRNELMELIQ YSPTTEQVYE IPLLFSPPWI NKYYIMDLSP GRSLVQWAVD HGHTVFLISY
RNPDESMRSV GMNDYLLDGP ITALDVIRDI TGQEKCNLLG LCLGGTLTMI SLTYLDAIGK
DRINSATFLN TLTDFSQPGA LGVFTDEVSV TKLEEQMNQT GFLPADNMAK TFNLMRGNDL
IWHYVVNNWM KGEQPPAFDL LTWNADSTRM PAVMHAFYLR SCYLKNQLAK GVMEIAGETL
NMKSVDQDLY FLAAEQDHIA PWRSSYKGAL IPTGNVRFVL SNSGHIAGIV NPPNPKSKHW
AADLDELPEN PDEWLASATM KPITWWEDWA TWISERAGKK IAPPPMGGDT HPPLEDAPGS
YVFGK
|
|---|
| |