| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_4044 |
|---|
| Symbol | |
|---|
| ID | 8449663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 4458084 |
|---|
| End bp | 4460192 |
|---|
| Gene Length | 2109 bp |
|---|
| Protein Length | 702 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 645043089 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_003203325 |
|---|
| Protein GI | 258654169 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0246164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.385301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCATCA GCGACGAGGC CATCCGGGCC TTTGCCGCCG AGTGGGCGCG AACCATCGCC
GGCACCAGTT ACGTGCCACT CGGCCTGGTC GAGCTTGAGA GCACGCTGAC CGAGCTGACC
GGCGAGTTGC GGTGCGTGCT GGCCAGTGAG CCGTTCGATC CGGCCCCCGC CGCCCGGGTC
GGGGCTGCGC TGGTCGATCG CCACTTCACC CACCCGGACA GCATCGCCTG CACCGTCGGC
CTGGTCTCGC GTTCGTGGGG TGGGGTCAAC GATCCGGACC TGCGGGATCG GGTCGCCGGC
CTGGCCGGCG CGCTGGCCGC GGGCTACGCG GAACGACTCC AGGAACGGAC GTTCGCCGAG
CAGGACGCCA TCCGCCGGGC CGCGATGATC GCCCAGGACG AGGCCGAGCG GGCCGCCCGT
GAGCTCCAGG CCCGGTTCCG GGCCGTGTTC TCCGGCGCGG CCGTCGGCAT CGGCGTCGGC
GACGTCGACG GCCGGATCCT GGACGTCAAC CCGGCCCTGC AGAAGATGCT CGGGTACACC
GTCGAGGAGA TGCGCCGGCG CAACGTCGGC GAGTTCATCC ACCCGGCCGA CACCGCCGAC
GTGTGGCAGC TCTACCAGCA GTTGATCACC GGCACGATCG ACACCTTCCG CACCGCCAAG
CGGTTCGTTC GTCAGGATGG CGACACCGTG TGGACGCAGC TCGCGGTGTC GCTGATCCGG
GACAACCGCG GGCGACCGGA ATTTCAGATC GCCGTCATGG AGGACGTCAC CGATCTGCGC
CGCCTGCAGA TCCGCCTGGA GCACCAGGCC CACCACGACG CGTTGACCGG GCTGGCCAAC
CGGGCCCTGT TCCAGCAGCG TCTGGGGGAG CTCGCCGCGA CCACGGACCC GACCGAGCGG
ATCGGCCTGT GCCTGCTGGA CCTGGACGGG TTCAAGGCGA TCAACGACAG TGTCGGGCAC
GGTGTCGGCG ACCGGGTGCT GGTGGAGATC GCGGCCCGGC TCGGCCAGAC CGTCGACGGC
GACCGGCAGC TGGTCGCCCG CCTCGGCGGC GACGAGTTCG TCATCCTGGT CGCGGGCACG
TCGGACGCCC AGGACATGGT CGCCGTGGCC GAGGCGGCCC TCGCGGCGGT GGCCCGACCG
GTCTCGGTGG CGGGCGGCGT CTTCAACGTC ACCGCCAGCG CCGGGCTGGT CGAGCGGACG
GCCGCCGGCG CCGATCCCGC CGAGCTGGTT CGCGCGGCCG ACATCACCCT GTACTGGGCC
AAGGCCGAGG GCAAGGCTCG ATGGGCCATC TTCGATCCCG AGCGCAGCCT GCGCGAGGTC
GACCAGTACA CGCTCGCCCA GTTGCTGCCC ACCGCGCTGG ACCGGGGCGA GTTCCGCCTG
CACTATCAGC CCCTGATCGC CCTGGCCGAC GGCCGGTTCA CCGGTTTCGA GGCGCTGCTG
CGGTGGGAGC ACCCGCGGCT GGGTCGGCTC CGGCCGGATC GGTTCATTGC CGCCGCCGAA
GAGTCGGGCA TCATCGTGCC GATCGGCCAG TGGGTCCTGC AGGAGTCGTG CCGGCAGGCT
CGCCGGTGGT ACGAGATCAC CGGCATCCGG CCCTGTGTCA GCGTCAACGT GGCCCTGCGC
CAGCTGTCGG ACGGCGGCCT GCTCGACGAC GTGCTGCGGG TGATCGAGGC CGAACAGCTC
ACGCCCGACC AGCTGCAGCT CGAGCTCACC GAACGTGCCG TCATCGGATC GGACCACGAA
CCGCTCGCCG AGCTGCAGGC TCTGGCCGCG CTCGGGGTGG GGATCGCGAT CGACGATTTC
GGCACCGGCT ACTCGAACAT GACCTACCTG CGCCGGTTGC CGATCACGGC GCTCAAACTC
GACCAGTCGT TCGTCAGCGA GCTGCGGCCC GACGCCGCGG ACCAGACGGA CGCCAAGATC
GTCCGGTCGA TCCTGACCCT GGCGCACGAC CTGGGCCTCA CCGTCACCGC CGAGGGGGTC
GAAACCGCCG CCCAGGCCCG GGCCCTGCGC GAACTCGGGT GCGATCAGGC GCAGGGGATG
TACTTCGGCG CGCCTGTCCC CGCCGACGCA CTCCTGCGCA CGCCCGATGC CCCCGGCGAA
ACGCGATGA
|
|---|
| Protein sequence | MSISDEAIRA FAAEWARTIA GTSYVPLGLV ELESTLTELT GELRCVLASE PFDPAPAARV
GAALVDRHFT HPDSIACTVG LVSRSWGGVN DPDLRDRVAG LAGALAAGYA ERLQERTFAE
QDAIRRAAMI AQDEAERAAR ELQARFRAVF SGAAVGIGVG DVDGRILDVN PALQKMLGYT
VEEMRRRNVG EFIHPADTAD VWQLYQQLIT GTIDTFRTAK RFVRQDGDTV WTQLAVSLIR
DNRGRPEFQI AVMEDVTDLR RLQIRLEHQA HHDALTGLAN RALFQQRLGE LAATTDPTER
IGLCLLDLDG FKAINDSVGH GVGDRVLVEI AARLGQTVDG DRQLVARLGG DEFVILVAGT
SDAQDMVAVA EAALAAVARP VSVAGGVFNV TASAGLVERT AAGADPAELV RAADITLYWA
KAEGKARWAI FDPERSLREV DQYTLAQLLP TALDRGEFRL HYQPLIALAD GRFTGFEALL
RWEHPRLGRL RPDRFIAAAE ESGIIVPIGQ WVLQESCRQA RRWYEITGIR PCVSVNVALR
QLSDGGLLDD VLRVIEAEQL TPDQLQLELT ERAVIGSDHE PLAELQALAA LGVGIAIDDF
GTGYSNMTYL RRLPITALKL DQSFVSELRP DAADQTDAKI VRSILTLAHD LGLTVTAEGV
ETAAQARALR ELGCDQAQGM YFGAPVPADA LLRTPDAPGE TR
|
|---|
| |