| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3976 |
|---|
| Symbol | |
|---|
| ID | 8449595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 4389217 |
|---|
| End bp | 4392183 |
|---|
| Gene Length | 2967 bp |
|---|
| Protein Length | 988 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 645043021 |
|---|
| Product | vitamin B12-dependent ribonucleotide reductase |
|---|
| Protein accession | YP_003203257 |
|---|
| Protein GI | 258654101 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.629167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0657242 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA CCATCGGAGT ACCAGGTTCG GCGAACGGCT CGAACGGGTC GGCCAAGGCT
CGCAAGAGCA AGGCCGCCGC GACCAACGGG GGAACGCAGG GCCTCACGCT GCAGCGGCTG
TTCACCACCG CCGGCGTGCA CCCGTACGAC GAGGTGAGCT GGCAGCGTCG CGACGTCGTG
ATGACCAACT GGCGGGACGG CACCGTCAAC TTCGAGCAGC GCGGCGTGGA GTTCCCCGAC
TTCTGGTCGG TCAACGCGAC GAACATCGTC ACCAGCAAGT ACTTCCGCGG CGCGGTCGGC
GGGCCCACCC GTGAGTCCAG CCTGCGCCAG CTCATCGACC GCGTGGTGTC CACCTACACC
GCCGCCGGCG TCGAGCACGG CTACTTCGCC ACCGAGCAGG ACACCGAGAT CTTCGAGCAC
GAGCTGACCT GGATGCTGCT GCACCAGGTG TTCGCGTTCA ACTCGCCGGT CTGGTTCAAC
GTGGGCACCA AGTCCCCGCA GCAGGTCTCG GCCTGCTTCA TCCTGTCCGT GGACGACACC
ATGGACTCGA TCCTGAACTG GTACCGGGAA GAGGGGCTGA TCTTCAAGGG CGGCTCCGGC
GCCGGGCTCA ACCTGTCCCG GATCCGCTCG TCCAAGGAGC TGCTGTCCTC CGGCGGCACC
GCCTCCGGGC CGGTCTCGTT CATGCGCGGT GCGGACGCCT CGGCCGGCAC CATCAAGTCC
GGTGGCGCCA CCCGCCGGGC GGCCAAGATG GTCGTGCTGG ACGTCGACCA CCCGGACATC
GCCGAGTTCG TCGAGACCAA GGCGCGCGAG GAGCACAAGA TCCGCGTGCT GCGCGACGCC
GGCTTCGACA TGGACCTGGG CGGCGACGAC ATCATCTCCG TGCAGTACCA GAACGCGAAC
AACTCGGTGC GCGTCTCCGA CGAGTTCATG CGCGCCGTCG ATGCCGACAC CGACGAGGGC
GCGAGCTTCG GGCTGCGTGC CCGGCAGACC GGCGAGGTCA TCGAGACCGT CGACGCCCGT
GAGCTTTTCG GCAAGATCAC GCAGGCCGCG TGGGAGTGCG CCGACCCCGG CATCCAGTAC
GACGACACGA TCAACGACTG GCACACCAGC CCCGAGTCGG GTCGGATCAG CGCGTCCAAC
CCGTGCAGCG AGTACATGCA CCTGGACAAC TCCTCGTGCA ACCTGGCCTC GCTGAACCTG
ATGAAGTTCC TGTCCGAGGA CGGCACGTTC GACGCGCCGA CCTTCGCGCG GGCCGTGGAA
TTCGTCATCA CCGCGATGGA CATCTCCATC TGCTTCGCCG ACTTCCCGAC CCAGCCGATC
GCCGAGACCA CCCGCGCCTA CCGGCAGCTG GGCATCGGCT ACGCGAACCT GGGTGCGCTG
CTGATGGCCA CCGGGCACGC CTATGACTCC GAGGGTGGCC GCTCGCTGGC CGCCGCCATC
ACCTCGCTGA TGACCGGTGT CGCCTACCGG CGTTCGGCCG AGCTGGCCGG CGTCGTCGGA
CCGTACGAGG GCTACGCCCG CAACGCCGAC GCGCACAAGC GGGTCATCCG CAAGCACGCC
GCGGCCAACG ACTACGTCCG CTCCATCGGC GGCAACGACG GTGCGGTGCT CAAGCTGGCC
ACCACCGTCT GGCAGGACAC GGTGGCCATC GGTGAGCGCA ACGGCTACCG CAACGCGCAG
GCCAGCGTGC TCGCCCCGAC CGGCACCATC GGTCTGATGA TGGATTGCGA CACCACCGGC
ATCGAGCCCG ATCTGGCGCT GGTGAAGTTC AAGAAGCTGG TCGGCGGTGG CTCCATGCAG
ATCGTCAACC AGACCGTGCC GGGGGCGCTC AAGTCACTGG GCTACCAGGC CGAGTCGATC
GAGGCGATCG TCGAGTACAT CGCCGAGCAC GGCCACGTGG TCGATGCCCC CGGCCTGCGG
CGCGAGCACT ACAGCGTGTT CGACTGCGCG ATGGGGGAGC GGTCCATCGC TCCGATGGGG
CACGTGCGGA TGATGGCGGC GGTGCAGCCG TTCATCTCCG GCGCGATCTC CAAGACCGTC
AACATGCCCG AGCACGCCAC GGTGGCCGAC GTCGCCGAGA TCTACCAGCA GGGCTGGAAG
ATGGGCCTCA AGGCGCTGGC GATCTACCGG GACAACTGCA AGGTCGGCCA GCCGCTGTCG
GCCTCGAACA AGAACCACGG CGAGAAGTCC GCCGACGCCT CGGTCGGTGC CGCGGCCGAG
GTGACGGCCG CGCCGGCCGC GCCCGTCGTC ACCGGCCCCG TGCGCCGGCG GTTGCCCAAG
AAGCGTCCGT CGCAGACGGT GTCGTTCACC GTGGGCGGTG CCGAGGGCTA CCTGACCACC
GGTTCCTACC CGGACGACGG CCTGGGTGAG GTGTTCATCA AGCTGGGCAA GCAGGGTTCC
ACCCTGGCCG GTGTGATGGA CGCGTTCTCC ATCGCGGTGT CGGTCGGTCT GCAGTACGGC
ATTCCGCTGG AGTCCTACGT CGCCAAGTTC ACCAACCTGC GCTTCGAGCC GGCCGGCATG
ACCGATGACC CGGACGTGCG GATCGCCACC TCGGTGATGG ACTACCTGTT CCGTCGCATC
GCGCTGGATT ATCTGCCGGT CGAGTCCCGG GCCGAGCTGG GCATCTTCTC CGCCGAGGAG
CGCCGGGCCC AGGTCGCCAC CAACTACGGG TCGGAGAGCC CGGCCCCGAC CGGGGTCGAC
GACGCCGACG ACGGCCTGGT GGAGAACCTG CGCACCACGG TCGACGCCAC CCCGGTGGTC
CGGCCGGCGG TGGAAAGCGG TGCCCCGAGC GCGGTTCCGG CCGGTGCGCG GGATGCCGGC
AAGGCGGGCT CGTCCACCGA GCTGCTGGAG CTGGTGATCG GTAAGTCGGC CGATGCCCCG
CTGTGCTTCA CCTGCGGGAC CAAGATGCGC CCGTCCGGAG CGTGCTACCT GTGCGAGGGG
TGCGGCTCCA CCAGCGGCTG CAGCTGA
|
|---|
| Protein sequence | MTETIGVPGS ANGSNGSAKA RKSKAAATNG GTQGLTLQRL FTTAGVHPYD EVSWQRRDVV
MTNWRDGTVN FEQRGVEFPD FWSVNATNIV TSKYFRGAVG GPTRESSLRQ LIDRVVSTYT
AAGVEHGYFA TEQDTEIFEH ELTWMLLHQV FAFNSPVWFN VGTKSPQQVS ACFILSVDDT
MDSILNWYRE EGLIFKGGSG AGLNLSRIRS SKELLSSGGT ASGPVSFMRG ADASAGTIKS
GGATRRAAKM VVLDVDHPDI AEFVETKARE EHKIRVLRDA GFDMDLGGDD IISVQYQNAN
NSVRVSDEFM RAVDADTDEG ASFGLRARQT GEVIETVDAR ELFGKITQAA WECADPGIQY
DDTINDWHTS PESGRISASN PCSEYMHLDN SSCNLASLNL MKFLSEDGTF DAPTFARAVE
FVITAMDISI CFADFPTQPI AETTRAYRQL GIGYANLGAL LMATGHAYDS EGGRSLAAAI
TSLMTGVAYR RSAELAGVVG PYEGYARNAD AHKRVIRKHA AANDYVRSIG GNDGAVLKLA
TTVWQDTVAI GERNGYRNAQ ASVLAPTGTI GLMMDCDTTG IEPDLALVKF KKLVGGGSMQ
IVNQTVPGAL KSLGYQAESI EAIVEYIAEH GHVVDAPGLR REHYSVFDCA MGERSIAPMG
HVRMMAAVQP FISGAISKTV NMPEHATVAD VAEIYQQGWK MGLKALAIYR DNCKVGQPLS
ASNKNHGEKS ADASVGAAAE VTAAPAAPVV TGPVRRRLPK KRPSQTVSFT VGGAEGYLTT
GSYPDDGLGE VFIKLGKQGS TLAGVMDAFS IAVSVGLQYG IPLESYVAKF TNLRFEPAGM
TDDPDVRIAT SVMDYLFRRI ALDYLPVESR AELGIFSAEE RRAQVATNYG SESPAPTGVD
DADDGLVENL RTTVDATPVV RPAVESGAPS AVPAGARDAG KAGSSTELLE LVIGKSADAP
LCFTCGTKMR PSGACYLCEG CGSTSGCS
|
|---|
| |