| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2617 |
|---|
| Symbol | |
|---|
| ID | 8448229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2868510 |
|---|
| End bp | 2869154 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 645041714 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003201957 |
|---|
| Protein GI | 258652801 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000000311719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0685304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCTATA GTCTGCACAT GCGTGCAGTC GCGGATCTGA CCGGAGCGGC ACTGATCCGG
GAAAGTGCGA TGCGGCTGAC CGCCGACCGG GGCTGGGCGG CGGTGTCGAT CCGGGACATC
GCCGCGGACG CCGGCGTGTC GTCGTCGCTG GTGGTGCACC ACTTCGGGAC CAAGGCCCGG
CTCCGGGAGG CGGTCGACGC CCGGGTGACC GAGGTCCTGG CCGACCTGCT CGGGCGGATG
GGCGACTCGG ACGCCCTGTC CGGGGAGTAC ATGTCGATTG CTGCCGCGTT CCACGACCAG
GTCGGCGCCG ACGGGGTGCT GCTGTCCTAC CTGCGGCGGC TGCTGATCGA CGGCGGTCCC
GCGGCGACCG CGCTGTTCGG TTCACTGTAC GACATGACAC TGGCCAGCCT GGCCGGGCTG
GAGTCGGCCG GGGTCGTGCG GCCGACCGCC GACCCGCCTG CTCGAGCGGC CTTCCTGCTG
GTCAACGACC TTGCGGTGGT GCTGCTCCGT GGCGAGGTGT CCCGGGTGCT CGGAGTCGAT
CCGCTGAGCC GGGCGGGGCT GCAGCGCTGG GGGAACACCG TGATGGAGAT CTACCGGGGC
GGTGCTTTCA CCATCGCCGA CGACGCCGGA CGGGGGACCG GGTGA
|
|---|
| Protein sequence | MCYSLHMRAV ADLTGAALIR ESAMRLTADR GWAAVSIRDI AADAGVSSSL VVHHFGTKAR
LREAVDARVT EVLADLLGRM GDSDALSGEY MSIAAAFHDQ VGADGVLLSY LRRLLIDGGP
AATALFGSLY DMTLASLAGL ESAGVVRPTA DPPARAAFLL VNDLAVVLLR GEVSRVLGVD
PLSRAGLQRW GNTVMEIYRG GAFTIADDAG RGTG
|
|---|
| |