| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2410 |
|---|
| Symbol | |
|---|
| ID | 8448021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2661708 |
|---|
| End bp | 2663393 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 645041529 |
|---|
| Product | signal peptide peptidase SppA, 36K type |
|---|
| Protein accession | YP_003201773 |
|---|
| Protein GI | 258652617 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00005921 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000106081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCA TCACGGTCCC GCATCGGCGG CGGATCCTGC TCGAACTGGA CCTGTCCACC
GCCCCCGTCG AGCTCGATCC GGCCGAGCCG CTGGCCCGGC TGCGGCAGCG GGGGCGCCGC
GATCTGCGGG CCACCCTGCG CGCGCTGCAC GAGGCGGCCG ACGACCCCCG GGTCGTCGGC
CTGGTCGCCC GGGTCGGCGG GCCGCTGCCC TGGTCGGTCA TGCAGGAACT GCGCGCCGGG
GTGCGGGCTT TCGCCGCCGG CGGCAAACCG ACGCTGGCCT GGGCGCAGAC CTTCGCCGAG
CAGCCCGGTG CGATGGCCGG CTACGTGCTG GCCACCGCGT TCGATGAGCT GTGGCTGCAA
CCCGGCGGTG AGGTCGGCCT GCTGGGAGTG GCGCTGGAGA CCACCTTCCT GCGCGGATCG
CTGGACAAGC TGGGCCTGCA GCCCCAACTG GACCAGCGGC ACGAGTACAA GAACGCGGCC
GACACGATCA TGCGGACCGA GTACACCCGG GCCCACCGGG AGGCGCTGGA CCGGGTCGTG
GGCTCGGTGT TCGACGACGC CGTCGAGGCC ATCGCCCAGG GTCGCCGGCT GGATCCCGCG
CAGGTCCGCA CGCTCGTCGA CGGCGGGCCG ACGCTGGCCC CGGCCGCCCG GGACGCCGGC
CTGGTCGACC GGCTCGGCTA CCGCGACGAG GCGCTGGCGG CGATGCGGGT GCGGGTCGGT
GACGAGCCCG AACTGCTCTT CGCCGACCGC TGGCGGCCCC GGCGGCGGCC CCTGCGGATC
GTCGGCGGGA CCCTGGGCCG GCCGGGTCGC CGTGGTCATG TCGCCCTGGT GACCATCCAG
GGCACCATCG ATTCCGGACG CTCCCGACGG GGACTGATGG GCCGGACGGC GGGCAGTGAC
ACGGTCGGCG CCGCGCTGCG GGCGGCCGCC GCGGACGAGC GGGCCCGGGC CGTCGTCCTG
CGGGTGGATT CCCCAGGCGG CTCCGCGGTG GCCTCCGAGA CCATCTGGCG AGAGGTCTGC
CTGCTCCAGC GGGCCAAGCC GGTCATCGTC GCCATGGGCG CCGTCGCGGC CTCCGGCGGG
TACTACGTGG CCTGCCCGGC CGACCGGATC GTCGCCCTGC CGGCCACCCT GACCGGGTCC
ATCGGGGTGT TCGGCGGCAA GGTCGTGGTG CAGGAACTGA TGACCCGGCT CGGGCTGTCC
GCCGGGTCGG TCCAGCGCGG GGCGCACGCG CGGATGTTCT CCTCCCGGCG ACCCTTCGAC
GAGGACGAGA AGACCAACCT GGCCGCCGGT CTGGATGCGA TCTACGACGA CTTCGTGGGC
AAGGTGGCCC AGGGCCGCGG CCGGTCCACC GGCCAGATCG AGGCGGTCGC CCGGGGCCGG
GTGTGGACCG GCCGGGACGC GGTTGCGGCC GGCCTGGTCG ACGAGCTCGG CGGTCTGCGG
GACGCGGTGC GGCTGGCCCG GGCGCGGGGT GGGCTGGCGC CGGACGCGCC GGTGCGACCG
GCCATCCGGC TCGGCCCGCT CGCCCGGTTC GGCCGGCCCC GCAACTCGGC CGACCCGCGC
GCGTCGACCG GTTCCGGGCT CCCCGGGATC CCCGACCGAA CCGCCGATCT GGGTGCCGAA
TTGGGCGCGC TGCTCGGACT GCCCGCGGCG GCCACGCTGC GGATGCCGCC GCTACGGCTG
TGCTGA
|
|---|
| Protein sequence | MARITVPHRR RILLELDLST APVELDPAEP LARLRQRGRR DLRATLRALH EAADDPRVVG
LVARVGGPLP WSVMQELRAG VRAFAAGGKP TLAWAQTFAE QPGAMAGYVL ATAFDELWLQ
PGGEVGLLGV ALETTFLRGS LDKLGLQPQL DQRHEYKNAA DTIMRTEYTR AHREALDRVV
GSVFDDAVEA IAQGRRLDPA QVRTLVDGGP TLAPAARDAG LVDRLGYRDE ALAAMRVRVG
DEPELLFADR WRPRRRPLRI VGGTLGRPGR RGHVALVTIQ GTIDSGRSRR GLMGRTAGSD
TVGAALRAAA ADERARAVVL RVDSPGGSAV ASETIWREVC LLQRAKPVIV AMGAVAASGG
YYVACPADRI VALPATLTGS IGVFGGKVVV QELMTRLGLS AGSVQRGAHA RMFSSRRPFD
EDEKTNLAAG LDAIYDDFVG KVAQGRGRST GQIEAVARGR VWTGRDAVAA GLVDELGGLR
DAVRLARARG GLAPDAPVRP AIRLGPLARF GRPRNSADPR ASTGSGLPGI PDRTADLGAE
LGALLGLPAA ATLRMPPLRL C
|
|---|
| |