Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_1649 |
Symbol | |
ID | 8447248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | - |
Start bp | 1815467 |
End bp | 1816402 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 645040772 |
Product | type II secretion system protein |
Protein accession | YP_003201028 |
Protein GI | 258651872 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.2409 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00110779 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCCGG CGCTGCTCGG CGGGATCCTC GGCGCGCTGG CCGCGGCCGG CCTGCTGATG GCGATCCTGG CCACCCCGCC GCTGCGCCGG CCGACCCTGT CCGACCGCAT CGCCCCCTAC GTCGCCGACG CCGGCGGCCA GTCCCGCCTG CTCGCCGGGT CCGCGCCCGG CCCGCGCAGC ACCCTCGGCC GGCTGGCCGC GCCGCTGCTG CGCGACGCCG TCCGCTTCGT CGACAAGATC ATGGGCGGGC GCGGCTCGGT GGAGCGACGG CTCACCGCCA TCAGCTCGCC ACTGACCGTC GACCAGTTCC GGATCGAACA GGTCGTGTGG GGCTCCCTCG GCGCCGCCGC CGGCGCCGGC ATCGGGCTGC TCGCCGTCGT CCTGGGCCAG TCCAACCCGT TCATCCTGCT GCTGCTGATC GTCGTCTCGG CCGCCGCCGG CGTCCTGGGC CGCGACTGGT GGCTCACCCA GGCGGTCAGC AAACAGGAAG AGGAGATCAT CGCCGAGTTC CCGGTGATCG CCGAGATGCT CGCGCTGTCG GTCACCGCCG GCGAAAGCCC GACCGGCGCG TTGGACCGGG TCACCAAGCT CGCGCACGGT CCCCTGGTCA GCCAGCTCAG CGGCGTCCTC GCCGAAACCC GGGCCGGCAC CCCGTTCCTG ACCGCCCTGA CCCACCTGCG GGACCGCACC CGGCTCGAGC CGCTGGCCCG GTTCCTGGAC GGGATGGCCG TCGCCATCGA GCGCGGCACC CCGCTGGCCG ACGTGCTCCG CGCGCAGGCG GCCGACGTCC GCGCCCTGTC GAAACGGCAA TTGCTCGAAT CCGGCGGCCG TAAAGAAATC GCCATGATGG TGCCCGTCGT TTTCCTGGTG CTGCCGATCA CCATTCTTTT CGCCCTCTAC CCCGGACTGC TGGCCATCAC GACGGTGGCC CAGTGA
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Protein sequence | MSPALLGGIL GALAAAGLLM AILATPPLRR PTLSDRIAPY VADAGGQSRL LAGSAPGPRS TLGRLAAPLL RDAVRFVDKI MGGRGSVERR LTAISSPLTV DQFRIEQVVW GSLGAAAGAG IGLLAVVLGQ SNPFILLLLI VVSAAAGVLG RDWWLTQAVS KQEEEIIAEF PVIAEMLALS VTAGESPTGA LDRVTKLAHG PLVSQLSGVL AETRAGTPFL TALTHLRDRT RLEPLARFLD GMAVAIERGT PLADVLRAQA ADVRALSKRQ LLESGGRKEI AMMVPVVFLV LPITILFALY PGLLAITTVA Q
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