| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NSE_0542 |
|---|
| Symbol | |
|---|
| ID | 3932276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Neorickettsia sennetsu str. Miyayama |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007798 |
|---|
| Strand | - |
|---|
| Start bp | 471847 |
|---|
| End bp | 472497 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637900698 |
|---|
| Product | RDD family protein |
|---|
| Protein accession | YP_506425 |
|---|
| Protein GI | 88608566 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1714] Predicted membrane protein/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGC TTTTTTCACC GTTCCCTGGT GTTATAAAAT CGATCTTTAA TTTTCCTCAC
AGGCTTTTTT CTTTTCCTCA TAAAAACAAG ACTGATGGGC GGGGAGTCAT TTACGCCAGT
CAATTTAAAC GTTCTGTCAG TACGATTATG GACCTTCTTT TTTGTGTTCT GATATTGAAG
GTTAGTGGGT ACTTACTTTC TTTCTTCGTT GATCTGCAGT TTCCAGTCGA GGTTCTTGAG
AGGTATAGAT TTAGTCTTCC TATGAGTCAG GCAGAAAGAG CTCTTATCAT AGGGTTCTAT
AAGAGTGTTC TAGTAATACA AGTATTTCAG TTGATACTTT TGGCAATATT ATTTGTTACC
TGTTGGCACA GGTTTGGCTG TACGCCAGGC AAGTGGATTT TAAGGTTGAG GCTTCTTGAC
GATGAGACTT TGGAAAAGCC TTCGGTCTCT GCATGTATAA AAAGGTTAAT TATGGTGCCT
TTGTCTTTGC TTGTGTTTTT CCTTGGCATG TTCTGGAGCA TTTTTGATAA GAAAAGTAGA
ACCTGGCATG ATATTTTCGC CGGAACCGTG GTTGTATCGA ATGGTGCTGA AATTTTTCGA
AAAGAAGCTG CTTATCATTC TGCAACTTAC CAGGGCAAAG CAGAGGATTG A
|
|---|
| Protein sequence | MNKLFSPFPG VIKSIFNFPH RLFSFPHKNK TDGRGVIYAS QFKRSVSTIM DLLFCVLILK
VSGYLLSFFV DLQFPVEVLE RYRFSLPMSQ AERALIIGFY KSVLVIQVFQ LILLAILFVT
CWHRFGCTPG KWILRLRLLD DETLEKPSVS ACIKRLIMVP LSLLVFFLGM FWSIFDKKSR
TWHDIFAGTV VVSNGAEIFR KEAAYHSATY QGKAED
|
|---|
| |