| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | NATL1_21721 |
|---|
| Symbol | focA |
|---|
| ID | 4780452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. NATL1A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008819 |
|---|
| Strand | + |
|---|
| Start bp | 1829174 |
|---|
| End bp | 1830085 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640085470 |
|---|
| Product | formate and nitrite transporters |
|---|
| Protein accession | YP_001015992 |
|---|
| Protein GI | 124026877 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2116] Formate/nitrite family of transporters |
|---|
| TIGRFAM ID | [TIGR00790] formate/nitrite transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00925864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.239969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAA GTGCCTCTCA AATGGACTAT GTCCTACCAA ATGAATTGGT AGATGGAATG
ATTGCTGCAG GTGGCAAGAA ATCATCTGTA AGCGTAAAAA ACTTGCTAAT AAGAGGCTTC
TATTCAGGAG CAATTTTAGG TTTAGCGACA TGTCTTGCAA TTACTATTGG TATTCAATCA
GGGATGCCTT GGTTAGGTTC TTTTATATTT CCTTTTGGTT TTGCAAGTAT CGTTCTTTTC
GGTATGGAGC TTGTTACTGG TAATTTTGCG TTACTACCAA TGGCCGTATG GGCTGGAAAG
AGTTCTTGGT CTGCAACTGT AAGAAATTGG CTATGGGTTT GGATCGGTAA TTTTCTAGGT
ACAGCATTTG TTGCCGTACT ACTTTCAATT AGTTTATCAA GTGCTGGAAA TGTAGATCCA
TTAACTGCTG CTGAAGGTGG AAAAGGATGG GCAGTTGTAG CAGCAAAAAT AATAGCTATA
CATAAAGCAA ACACAGTTGT TAAATATGAA GCACTTGGAA GTACTGGTTT TTTCCTTGCA
TTTTTACGTG GAGTAATTGC AAACTGGCTA GTTTGTTTAG GTGTAACAAT GGCACTTGTA
AGTAAAAGTG TTCCAGGAAA GATACTTGCT TGCTGGCTAC CTATAACTGC ATTCCAAACA
ATGGGAATGG AGCACATAGT AGTTAATATG TTTTTGCATA CAACTGGCCC TCTACTTGGT
TCGGGTATTC CTTTTACAAA AGTAATTTTT TGGAATTTCT TACCAGTGAC GATTGGAAAT
ATTGTTGGAG GAATGGTATT TATTGGAATG CTTTTCTATA GCACCCACAA AACTCCTATC
TCTAATGTTT TACCAGACGT AAAAGATGAA AAATTAGAAC GAGAGCTCGA AGCACAACTT
GGTGCAAGAT AA
|
|---|
| Protein sequence | MTSSASQMDY VLPNELVDGM IAAGGKKSSV SVKNLLIRGF YSGAILGLAT CLAITIGIQS
GMPWLGSFIF PFGFASIVLF GMELVTGNFA LLPMAVWAGK SSWSATVRNW LWVWIGNFLG
TAFVAVLLSI SLSSAGNVDP LTAAEGGKGW AVVAAKIIAI HKANTVVKYE ALGSTGFFLA
FLRGVIANWL VCLGVTMALV SKSVPGKILA CWLPITAFQT MGMEHIVVNM FLHTTGPLLG
SGIPFTKVIF WNFLPVTIGN IVGGMVFIGM LFYSTHKTPI SNVLPDVKDE KLERELEAQL
GAR
|
|---|
| |