Gene NATL1_20561 details

Gene Information

• Locus tag: NATL1_20561
• Symbol: rimM
• ID: 4779996
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Prochlorococcus marinus str. NATL1A
• Kingdom: Bacteria
• Replicon accession: NC_008819
• Strand: +
• Start bp: 1700130
• End bp: 1700660
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640085352
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001015876
• Protein GI: 124026761
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.656397
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTCGAAA AAGATAAATG GATGTCAATA GGTGAAATTG TTGCTCCGCA AGGTTTAAGA 
GGAGATCTTC GAATTAAACC TAGCAGCGAC TTTCCTGAAA GATTTACAAA ACCTGGGAAG 
AGATGGATTC AAAAAACTGA TGAATTGCCT ACTGAAATCA AATTAACTAA AGGGAAGCTT 
ATTCCAGGTA AGTCAATCTA TGTACTTTCT ATCGAGGGAG TATCTACTAG AAGTTCTGCA 
GAAGAAATTA TTGGTTGGAA ATTAGTCATA CCAATTGATA GCAGACCTAT GTTGAGTAAA 
GATGAGTACC ATTACCATGA TTTAATTGGT TTAGAAGCAA GAAGTGGTCC AAGTAAAGCT 
CTAATTGGTT ATGTAACTGA CTTAATCAAA GGAGGGAATG ACCTTCTAGA GATAGAGTTA 
GTGGAAGGTA AAAAAGTTTT GGTACCTTTT GTTAAAGAAA TTGTCCCAGA AATAGAAATC 
AAAGAAAAAT GGCTGCTAAT CAACCCACCC CCTGGCTTAT TGGAACTCTA A 

 

Protein sequence

MFEKDKWMSI GEIVAPQGLR GDLRIKPSSD FPERFTKPGK RWIQKTDELP TEIKLTKGKL 
IPGKSIYVLS IEGVSTRSSA EEIIGWKLVI PIDSRPMLSK DEYHYHDLIG LEARSGPSKA 
LIGYVTDLIK GGNDLLEIEL VEGKKVLVPF VKEIVPEIEI KEKWLLINPP PGLLEL