Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | NATL1_15151 |
Symbol | ispA |
ID | 4779543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. NATL1A |
Kingdom | Bacteria |
Replicon accession | NC_008819 |
Strand | - |
Start bp | 1228938 |
End bp | 1229837 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640084797 |
Product | polyprenyl synthetase |
Protein accession | YP_001015337 |
Protein GI | 124026221 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.423714 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGAAG CAATCGCTTC TTTTGACTTC GCTGAGTATC TAGAGAAAGC TAGAACTCGC GTTGAAGATG CGCTGGGTGC GTCTCTGGGC CCTGAAAAGC CAGAAAAATT AAGGGAATCT ATGCGCTATT CCCTTTTGGC GGGAGGGAAG AGATTGAGAC CAATACTTTG TCTTGCTGCC TGCGAACTCG CTGGAGGCGA ACTTGAAAAA GCATTGCCAA CAGCAGTTGC TCTGGAAATG ATTCATACAA TGTCTCTTAT CCATGATGAT CTGCCTTCAA TGGATAATGA TGATCTTCGT CGAGGGCGTC CAACTAATCA CAAGGTTTAC GGAGATGCGG TGGCCATACT TGCTGGAGAT GCTCTATTGA CCAGAGCTTT TGAGATGGTG TCAATTCGAA CAGAGGGAAT ACCTTCAGAG AGACTATTGA AAATAATTGG TGAGCTTTCT TTAGCGGCAG GGGCTCCTGG GCTAGTGGGA GGACAAGTAG TTGATCTCGA TTGTGAGGGG AAAGAAGTTG ATTTAGAAAC TTTGGAGTAT ATTCACCTTC ATAAAACAGG AGCTCTACTT AAGGCATGTG TCACTTGCGG AGCATTGATT GGCGGAGCTG ATGAGAAACT CCTAGACGCA CTAAGTATCT ATGCCAGAGG GATTGGATTG GCATTCCAAA TAATTGATGA CATCCTTGAT GTAACAGCAA GTAGTGAAGT ATTGGGAAAA ACGGCAGGAA AGGATTTAAT TGCTGATAAG ACTACTTACC CCAAATTACT TGGTCTTGAT GAATCAAGAA GGAGAGCAGA TCTTTTAGTA GCTAAAGCAA AAAGTGCTCT TGATCCTTGG CCAGAAAAAT CAAAACCTCT TCTTGCATTG GCTGATTACA TTACAAGTAG AGATAGATGA
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Protein sequence | MQEAIASFDF AEYLEKARTR VEDALGASLG PEKPEKLRES MRYSLLAGGK RLRPILCLAA CELAGGELEK ALPTAVALEM IHTMSLIHDD LPSMDNDDLR RGRPTNHKVY GDAVAILAGD ALLTRAFEMV SIRTEGIPSE RLLKIIGELS LAAGAPGLVG GQVVDLDCEG KEVDLETLEY IHLHKTGALL KACVTCGALI GGADEKLLDA LSIYARGIGL AFQIIDDILD VTASSEVLGK TAGKDLIADK TTYPKLLGLD ESRRRADLLV AKAKSALDPW PEKSKPLLAL ADYITSRDR
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