| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_4777 |
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| Symbol | |
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| ID | 4644102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium vanbaalenii PYR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008726 |
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| Strand | - |
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| Start bp | 5113925 |
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| End bp | 5117563 |
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| Gene Length | 3639 bp |
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| Protein Length | 1212 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639808246 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_955556 |
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| Protein GI | 120405727 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.549284 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTAT CGGGGACCCT CCATGTCCAC ACCCCGATCG CGGGCCTCGT CGATCTGGCG
CTGCGTGATC CCGCCCTGCA GGAGATCGCT CGTCGTGCCG GCGACCGGCC CGCCGATCTC
AACCTCGTCG GCCCGGCCAG CGCACGCGTG TTCGTGGCGT CCGCGCTCGC CCAGCCGGGG
CTGCTGCTGG TCGTCACCGC CACCGGCCGC GAGGCCGACG ACCTGACCGC CGAGTTGCGC
GGCGTCTTCG GCGACGCGGT GGCGTTGTTC CCGTCGTGGG AGACGTTGCC GCACGAGCGG
CTCTCACCCG GCGTCGACAC CGTCGGTGCC CGCATGATGC TGCTGCGCCG CCTCACCCAC
CCCGACGACG CGCGGCTCGG CCCGCCGCTG CGGATCGTGG TGACGACTGC GCGGTCGCTG
CTGCAGCCGA TGGCCCCCGA TCTGGCCGAG GTGGATCCGG TCACGCTCAC CGTCGGCGGC
GAGGCGGACT TCGATGCCGT GGTCGCGCGG CTCGTGGATC TGGCCTACAG CCGCGTCGAC
ATGGTCGGCA AACGCGGTGA ATTCGCGGTC CGCGGAGGCA TTCTCGACGT CTTCCCGCCC
ACGGCCGAGC ACCCCGTACG TGTCGAGTTC TGGGGTGACG AGGTCTCCGA GATGCGGATG
TTCTCGGTGG CCGACCAGCG TTCGATCCCC GAGATCGAGA TCGACACGCT GATCGCGGTG
CCGTGCCGTG AACTGCTGCT GACCGCCGAG GTCCGCGACC GTGCCGCCGC ACTGGCGAGC
GAACACCCGG TCCTGGAGAA CAGCGTGACC GGCAGCGTGC CCGACATGCT GGCCAAGCTG
GCCGAGGGCA TCCCGGTCGA CGGCATGGAG GCGCTGCTTC CGCTGTTGCG TCCCAGCGAC
TTCGCCACGC TGCCCGACCA CCTACCCGAA GGCACCCCGC TGCTGGTGTG CGATCCGGAG
AAGGTCCGCA CCCGCGCCGC CGATCTGATC AAGACCGGCC GCGAGTTCCT GGAGGCGTCG
TGGTCGACCG CGGCGGTCGG CGGGGACGTG CCCATCGACA TCGAGGCGCT CGGCGTGTCG
GGCTACGTCG GTTACGGCGA CGCGCGCGAC GCGGCCCGCG CCGGCGGGCA TCCGTGGTGG
ACGTTGAGCC AGCTCGACAG CGGTGCCGGC GAGTCCACGG CGCTCGACAT CCGGCCCGCA
CCGTCGGCGC GCGGCCAGCA GCACAATCTC GATGAGATCT TCGCGATGCT GCGCGCCCAC
GTCGCAACCG GCGGGTTCGG GGTCGTCGTC ACCCCCGGGT CCGGCACCGC GATGCGGGTC
GTCGAACAAC TCTCCGAATC CGACATCCCC GCAACGGTTC TGGAGCCGGG TGCGGTGCCG
GGTGAAGGTG TCGTCGGGGT CATCAAGGGG CCGCTGCACG ACGGTGTGGT GATCCCGGGC
GCCAACCTCG TGGTGATCAC CGAGACCGAC CTGACCGGTA ACCGGGCCGC GGCCACCGAG
GGCAAGAAGC TGGCGGCCAA GCGCCGCAAC GTCGTTGACC CGCTGGCGCT GACCGCGGGC
GACCTGGTGG TGCACGACCA GCACGGCATC GGCCGCTTCG TGGAGATGAC CGAGCGGGTG
ATCGGCGGGG CGCGACGCGA GTACCTGGTG CTGGAGTACG CGTCGGCCAA GCGCGGCGGT
GGGTCCGATC GGCTGTACGT GCCGATGGAT TCACTGGACC AGCTGTCCCG CTACGTCGGT
GGCGAGGCGC CGACGCTGAG CCGCCTCGGC GGCAGCGACT GGGCCAACAC GAAAACCAAG
GCGCGCAAAG CGGTTCGCGA GATCGCCGCC GAGCTCGTCG CGCTGTACGC CAAACGTCAG
GCCTCGGCCG GGCACGCGTT CGCCCCGGAC ACCCCGTGGC AGCGCGAGAT GGAAGACGCG
TTCGGCTTCA CCGAGACCGT CGACCAGCTG ACCGCGATCA CCGAGGTGAA ATCCGACATG
GAGAAGCCGG TCCCGATGGA CCGGGTGATC TGCGGTGACG TCGGCTACGG CAAGACCGAG
ATCGCGGTGC GCGCGGCGTT CAAGGCGGTG CAGGACGGCA AGCAGGTCGC GGTGCTGGTG
CCGACCACGC TGCTGGCCGA TCAGCATCTT CAGACGTTCA CCAACCGGAT GACCGGTTTC
CCGGTCACGG TCAAGGGGCT CTCGCGGTTC ACCGACCCGG CCGAGTCCCG CGCCACGATC
GAGGGCATGA AGGACGGGTC CGTCGACATC GTGATCGGCA CCCACCGGCT GCTGCAGACG
GGTGTGACGT GGAAGGACCT CGGCCTGGTC ATCGTCGACG AGGAGCAGCG GTTCGGCGTC
GAGCACAAGG AGCACATCAA GTCGATGCGC ACCCACGTCG ACGTGCTGAC CATGAGCGCC
ACCCCGATCC CGCGCACCCT GGAGATGAGC CTGGCCGGTA TCCGGGAGAT GTCGACGATC
CTGACCCCGC CCGAGGAGCG CTACCCGGTG CTGACCTACG TCGGCCCGCA CGACGACAAA
CAGGTCGCCG CGGCGCTGCG CCGCGAGATG CTGCGCGACG GGCAGGCGTT CTACATCCAC
AACCGGGTGC GCACGATCGA CTCGGCCGCC GCCAAGGTGC GCCAGCTGGT ACCCGAGGCC
CGGGTGGTGG TCGCGCACGG GCAGATGCCC GAGGAGCAGC TGGAGAAGAC CGTCGAAGGG
TTCTGGAACC GCGAGTACGA CATTCTGGTC TGCACGACGA TTGTCGAGAC GGGCCTGGAC
ATCTCGAACG CGAACACGCT GATCGTCGAG CGCGCCGACA CGTTCGGGCT GTCGCAGCTG
CATCAGCTGC GCGGCCGGGT CGGGCGGTCG CGTGAACGGG GTTATGCGTA CTTCCTGTAC
CCGCCGGAGG TTCCGCTGAC CGAGACGGCC TACGACCGGC TCGCCACGAT CGCCCAGAAC
AACGAGTTGG GCGCGGGCAT GGCGGTGGCG ATGAAGGACC TCGAGATCCG CGGCGCGGGA
AACGTGTTGG GGGCCGAGCA GTCCGGGCAC GTCGCCGGTG TGGGCTTCGA CCTGTACGTG
CGTCTGGTGG GCGAGGCCGT AGAAGCATAT CGAGCCGCCG CGGACGGGAA AACCGTTGCG
GCGCCGGAGG AACCGAAGGA CGTCAGGATC GACCTGCCGG TCGATGCGCA CCTGCCGCCG
GACTACATCG GCAGCGACAG GCTGCGGTTG GAGGCCTACC GCCGGTTGGC GGCCGCACCC
GACGACGCCG CCGTCGACGC GGTGATCGAG GAACTCGTCG ACCGGTACGG TCCGCTTCCC
GAGCCGGCGC AGCGACTGGT CGCGGTCGCG CGGCTGCGGC TGCTGGCGCG CGCGCACGGC
GTCACCGAGA TCGGCGCCCC GTCGGCGACG ACGCTGCGCA TCTCGCCGAT GACGCTTCCG
GATTCGGCAC AGCTGCGGCT CAAGCGGCTC TATTCCGGTG CGAACTACCG CGCCACCACC
TCCACCGTGC AGGTTCCGGT CCCGCGCGCG GGCAGCGGGG TGGGGTCGCC GCGGATCCGC
GATCTGGAGC TGGTGGCCTT CGTGGCGGGA TTGCTGCTGG CCATCGACGG GAAACCGGGC
GAGGAAGTTG ATATAACCAA GTTCGGAGGT GGCGCATGA
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| Protein sequence | MTVSGTLHVH TPIAGLVDLA LRDPALQEIA RRAGDRPADL NLVGPASARV FVASALAQPG
LLLVVTATGR EADDLTAELR GVFGDAVALF PSWETLPHER LSPGVDTVGA RMMLLRRLTH
PDDARLGPPL RIVVTTARSL LQPMAPDLAE VDPVTLTVGG EADFDAVVAR LVDLAYSRVD
MVGKRGEFAV RGGILDVFPP TAEHPVRVEF WGDEVSEMRM FSVADQRSIP EIEIDTLIAV
PCRELLLTAE VRDRAAALAS EHPVLENSVT GSVPDMLAKL AEGIPVDGME ALLPLLRPSD
FATLPDHLPE GTPLLVCDPE KVRTRAADLI KTGREFLEAS WSTAAVGGDV PIDIEALGVS
GYVGYGDARD AARAGGHPWW TLSQLDSGAG ESTALDIRPA PSARGQQHNL DEIFAMLRAH
VATGGFGVVV TPGSGTAMRV VEQLSESDIP ATVLEPGAVP GEGVVGVIKG PLHDGVVIPG
ANLVVITETD LTGNRAAATE GKKLAAKRRN VVDPLALTAG DLVVHDQHGI GRFVEMTERV
IGGARREYLV LEYASAKRGG GSDRLYVPMD SLDQLSRYVG GEAPTLSRLG GSDWANTKTK
ARKAVREIAA ELVALYAKRQ ASAGHAFAPD TPWQREMEDA FGFTETVDQL TAITEVKSDM
EKPVPMDRVI CGDVGYGKTE IAVRAAFKAV QDGKQVAVLV PTTLLADQHL QTFTNRMTGF
PVTVKGLSRF TDPAESRATI EGMKDGSVDI VIGTHRLLQT GVTWKDLGLV IVDEEQRFGV
EHKEHIKSMR THVDVLTMSA TPIPRTLEMS LAGIREMSTI LTPPEERYPV LTYVGPHDDK
QVAAALRREM LRDGQAFYIH NRVRTIDSAA AKVRQLVPEA RVVVAHGQMP EEQLEKTVEG
FWNREYDILV CTTIVETGLD ISNANTLIVE RADTFGLSQL HQLRGRVGRS RERGYAYFLY
PPEVPLTETA YDRLATIAQN NELGAGMAVA MKDLEIRGAG NVLGAEQSGH VAGVGFDLYV
RLVGEAVEAY RAAADGKTVA APEEPKDVRI DLPVDAHLPP DYIGSDRLRL EAYRRLAAAP
DDAAVDAVIE ELVDRYGPLP EPAQRLVAVA RLRLLARAHG VTEIGAPSAT TLRISPMTLP
DSAQLRLKRL YSGANYRATT STVQVPVPRA GSGVGSPRIR DLELVAFVAG LLLAIDGKPG
EEVDITKFGG GA
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