Gene Mvan_3330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMvan_3330 
SymbollysS 
ID4644527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium vanbaalenii PYR-1 
KingdomBacteria 
Replicon accessionNC_008726 
Strand
Start bp3541858 
End bp3545160 
Gene Length3303 bp 
Protein Length1100 aa 
Translation table11 
GC content70% 
IMG OID639806807 
Productlysyl-tRNA synthetase 
Protein accessionYP_954133 
Protein GI120404304 
COG category[J] Translation, ribosomal structure and biogenesis
[S] Function unknown 
COG ID[COG1190] Lysyl-tRNA synthetase (class II)
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.27282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.711465 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCAA CCAGCCTCGC CCGGGCCCGT CCGACGTCCA GCCACCGCTG GGTGCCCGCG 
GCCGCCGGGT GGATCGTGGG GGTCATCGCG ACGCTGTCGC TGCTGGCCAG CGTCTCGCCG
CTGGTCCGGT CCCTGATCCG GGTCCCGCGC GAGTGGGTCG ACGACTACAT CTTCAACTTC
CCCGACACCA GTTTCGCGTG GGCGTTCGTG CTGGCGCTGC TCGCCGCCGC CCTGGCCGCG
CGCAAACGCA TCGCCTGGTG GATCCTCGTC GGCTACATGA TCGCGGCGGC CGGTTGGAAC
ATCGCCGGTC TGGCCGAGGG CCGAGAACGC TGGTTCGCCG AGGTCGGCGA GGTCATCGGT
CTGGCGTTTC ACCTGGCCGC CATCGCGTTC CTGCTGCTTG CCCGCAAGGA GTTCTGGGCC
AGGGTGCGCC GCGGCGCGTT GCTCAAGGCC GCCGCGACGC TGGTGGCGAG CATGGCCGTC
GGCACACTCA TCGGCTGGGG TCTGCTCGAA CTGTTCCCCG GATCCCTGGC CCGGTCGGAC
CGGTTCCTGT ACGCGCTGAA CCGGGTCAGC GCGTTCGCCG GGGCCGACGC CGCGTCGTTC
AGCGGTCATC CGCACGTGTT CGTCAACGCG CTGCTCGGCC TGTTCGGGGC GGTGGCCCTG
ATGGTCACGG CGATCGTGCT GTTCCAGTCG CAGCGCGCGG ACAACGCGCT CACCGGTGAG
GACGAGTCGG CGATCCGCGG TCTGCTCGAG CTGTACGGCA AGAACGACTC GCTGGGCTAT
TTCGCGACCC GGCGCGACAA GGCCGTGGTG TTCGCGCCCA GCGGCCGCGC CGCGATCACC
TACCGCGTGG AGGTCGGGGT GTGTCTGGCC AGCGGCGACC CGGTCGGTGA CCCCAGGTCC
TGGCCGCAGG CGATCGACGC GTGGCTCAAG CTGTGCCAGG CCTACGGCTG GGCGCCGGGC
GTGATGGGCG CGAGCGCAGC TGGCGCACAA GCCTTTCGAG AGGCCGGGCT CAACGCCCTG
CAACTCGGCG ACGAGGCGAT CCTGCATCCG GAGGACTTCC GGTTGTCCGG GCCCGACATG
CGGGCCGTCC GGCAGGCGGT GACCCGCGCC CGGCGTGCCG GCGCCACCGT GCGGATCCGC
AGGCACCGGG AGCTGCCCGC CGACGAGATG GCCGCGGTCA TCGAGCGGGC CGATGCCTGG
CGCGACACCG ACGACGAGCG CGGGTTCTCG ATGGCGCTGG GGCGGCTCGG CGATCCCGCC
GACGGGGACT GCCTGCTGGT GGAGGCGGTG CAGGCCGACC AGGTGGTCGC GATGCTGTCG
CTGGTGCCAT GGGGCGGCAA CGGAGTGTCC CTCGATCTGA TGCGCCGTTC CCCGCAATCC
CCCAACGGCA CCATCGAATT GATGGTCAGC GAGCTGTGCA TGCAGTCCGA GGACATCGGC
ATCACCCGGA TCTCGTTGAA TTTCGCGATG TTCCGCTCGG CCTTCGAGCA GGGCGCCCAA
CTGGGCGCGG GTCCGGTGGC AAGGCTGTGG CGGTGGCTGC TGGTGTTCTT CTCGCGCTGG
TGGCAGCTGG AGACCCTGTA CCGGTCGAAC ATGAAGTACC AGCCCGAATG GGTTCCCCGG
TACGCGTGCT ACGACGACGC CAGGCTGGTG CCCCGCGTCG GCGTGGCCTC TGTGATCGCC
GAAGGCTTTC TCGTGCTGCC GTTCTCGCGG CGCCATGAAC AGCCGCACAC CGGCCACCAC
ATCGCCGCCC CCGGAACACT GGTGGCCACC GGCCTGTTGC ACAGCGACGG CACCGCACCC
GACGGGATGG GACTGCAGGC CGACCTGGCC GACGACGACC AGCCGAGGCT GCCCGAGCAG
GTCCGGGTCA GGATGGCCAA ACTCAAGGCG CTTCAAGCCC AGGGGGTCGA CGCGTATCCG
GTGGCCAACC CGCCCAGCCA CACCGTCGCG CAGGCTCTGG CCGCCGAGGA CGGCGCAGAC
GTCGCGGTCG CGGGCCGGGT GCTGCGGTCA CGCGACTACG GCGGCGTGCT GTTCGCCCAG
CTCCGCGACT GGTCAGGCGA AACCCAACTG GTGCTGGACA ATTCGCTGCT CGCCGACGGC
AGCACCGCGG ACTTCACCCG GACCATCGAC CTCGGTGACC TGATCGAGGT CACGGGCACG
ATGGGCCGCA GCCGGTCGGG CAAGTGGTCA CTGCTGGTCA GCGGCTGGCG GCTGATCGGA
AAGTGCCTGC GCCCGTTACC GGACAAGTGG AAGGGCCTGA CCGATCAGGA GGCGCGGGTC
CGCGCCCGCT ATGTCGATCT CGCGGTCAAC ACCGATGCCC GGGAGCTGAT CCGGGCCCGC
AGCGCGGTGC TGCACGCGAT CCGCGAGACC CTGGTCGCCA AAGACTTCCT GGAAGTCGAG
ACGCCGATCC TGCAACAGAT TCACGGCGGT GCGAATGCCC GGCCCTTCCT GACCCACATC
AACGCCTACG ACCTCGACCT GTATCTGCGG ATCGCGCCCG AGCTGTATCT GAAGCGGTTG
TGCGTCGGTG GTGTGGAGCG GGTGTTCGAA CTCGGACGCG CCTTCCGCAA CGAGGGTGTC
GACTTCAGCC ACAACCCGGA GTTCACGCTG CTGGAGGCGT ATCAGGCGCA CGCCGACTAC
CACGTGTGGA TCGACGGTTG CCGGGAGCTG ATCCAGAACG CCGCGCAGGC GGCCAACGGT
GCGCAGGTGT TCATGCGGCC CCGTGCGGAC GGGGTTCTTG AGCCCGTCGA CATCTCCGGT
CCGTGGACGG TCAAGACCGT GCACGGCGCG GTGTCCGAGG CGCTCGGCGA GCAGATCGGC
CCGGACACCG ATCTGGCCAC GTTGCGCCTG CTCTGCGACC GCGCGGGCAT TCCCTACCTG
ACGCACTGGG ACGCCGGAGC GGTGGTGCTC GAGCTGTACG AGCACCTCGT CGAGGACCAG
ACCCGGGAAC CGACGTTCTA CAAGGACTTC CCCACCTCGG TCTCTCCGCT GACGCGGCCG
CACCGCAGCA TCCCCGGGGT GGCCGAGCGC TGGGACCTGG TGGCCTGGGG TGTCGAACTC
GGCACCGCCT ACAGCGAGCT CACCGATCCG GTCGAGCAGC GCCGCCGTCT GCAGGAGCAG
TCGCTGCTCG CCGCGGGCGG TGACCCGGAA GCGATGGAGC TCGACGAGGA CTTCCTGCAG
GCGATGGAGT ACGCGATGCC TCCGACGGGC GGGCTGGGGA TGGGCGTGGA CCGGGTGGTC
ATGCTCATCA CCGGGCGCAG CATCCGCGAG ACCCTGCCCT TTCCGCTGGC AAAACCGCGG
TAA
 
Protein sequence
MTPTSLARAR PTSSHRWVPA AAGWIVGVIA TLSLLASVSP LVRSLIRVPR EWVDDYIFNF 
PDTSFAWAFV LALLAAALAA RKRIAWWILV GYMIAAAGWN IAGLAEGRER WFAEVGEVIG
LAFHLAAIAF LLLARKEFWA RVRRGALLKA AATLVASMAV GTLIGWGLLE LFPGSLARSD
RFLYALNRVS AFAGADAASF SGHPHVFVNA LLGLFGAVAL MVTAIVLFQS QRADNALTGE
DESAIRGLLE LYGKNDSLGY FATRRDKAVV FAPSGRAAIT YRVEVGVCLA SGDPVGDPRS
WPQAIDAWLK LCQAYGWAPG VMGASAAGAQ AFREAGLNAL QLGDEAILHP EDFRLSGPDM
RAVRQAVTRA RRAGATVRIR RHRELPADEM AAVIERADAW RDTDDERGFS MALGRLGDPA
DGDCLLVEAV QADQVVAMLS LVPWGGNGVS LDLMRRSPQS PNGTIELMVS ELCMQSEDIG
ITRISLNFAM FRSAFEQGAQ LGAGPVARLW RWLLVFFSRW WQLETLYRSN MKYQPEWVPR
YACYDDARLV PRVGVASVIA EGFLVLPFSR RHEQPHTGHH IAAPGTLVAT GLLHSDGTAP
DGMGLQADLA DDDQPRLPEQ VRVRMAKLKA LQAQGVDAYP VANPPSHTVA QALAAEDGAD
VAVAGRVLRS RDYGGVLFAQ LRDWSGETQL VLDNSLLADG STADFTRTID LGDLIEVTGT
MGRSRSGKWS LLVSGWRLIG KCLRPLPDKW KGLTDQEARV RARYVDLAVN TDARELIRAR
SAVLHAIRET LVAKDFLEVE TPILQQIHGG ANARPFLTHI NAYDLDLYLR IAPELYLKRL
CVGGVERVFE LGRAFRNEGV DFSHNPEFTL LEAYQAHADY HVWIDGCREL IQNAAQAANG
AQVFMRPRAD GVLEPVDISG PWTVKTVHGA VSEALGEQIG PDTDLATLRL LCDRAGIPYL
THWDAGAVVL ELYEHLVEDQ TREPTFYKDF PTSVSPLTRP HRSIPGVAER WDLVAWGVEL
GTAYSELTDP VEQRRRLQEQ SLLAAGGDPE AMELDEDFLQ AMEYAMPPTG GLGMGVDRVV
MLITGRSIRE TLPFPLAKPR