Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mvan_3330 |
Symbol | lysS |
ID | 4644527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium vanbaalenii PYR-1 |
Kingdom | Bacteria |
Replicon accession | NC_008726 |
Strand | + |
Start bp | 3541858 |
End bp | 3545160 |
Gene Length | 3303 bp |
Protein Length | 1100 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639806807 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_954133 |
Protein GI | 120404304 |
COG category | [J] Translation, ribosomal structure and biogenesis [S] Function unknown |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) [COG2898] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.27282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.711465 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCAA CCAGCCTCGC CCGGGCCCGT CCGACGTCCA GCCACCGCTG GGTGCCCGCG GCCGCCGGGT GGATCGTGGG GGTCATCGCG ACGCTGTCGC TGCTGGCCAG CGTCTCGCCG CTGGTCCGGT CCCTGATCCG GGTCCCGCGC GAGTGGGTCG ACGACTACAT CTTCAACTTC CCCGACACCA GTTTCGCGTG GGCGTTCGTG CTGGCGCTGC TCGCCGCCGC CCTGGCCGCG CGCAAACGCA TCGCCTGGTG GATCCTCGTC GGCTACATGA TCGCGGCGGC CGGTTGGAAC ATCGCCGGTC TGGCCGAGGG CCGAGAACGC TGGTTCGCCG AGGTCGGCGA GGTCATCGGT CTGGCGTTTC ACCTGGCCGC CATCGCGTTC CTGCTGCTTG CCCGCAAGGA GTTCTGGGCC AGGGTGCGCC GCGGCGCGTT GCTCAAGGCC GCCGCGACGC TGGTGGCGAG CATGGCCGTC GGCACACTCA TCGGCTGGGG TCTGCTCGAA CTGTTCCCCG GATCCCTGGC CCGGTCGGAC CGGTTCCTGT ACGCGCTGAA CCGGGTCAGC GCGTTCGCCG GGGCCGACGC CGCGTCGTTC AGCGGTCATC CGCACGTGTT CGTCAACGCG CTGCTCGGCC TGTTCGGGGC GGTGGCCCTG ATGGTCACGG CGATCGTGCT GTTCCAGTCG CAGCGCGCGG ACAACGCGCT CACCGGTGAG GACGAGTCGG CGATCCGCGG TCTGCTCGAG CTGTACGGCA AGAACGACTC GCTGGGCTAT TTCGCGACCC GGCGCGACAA GGCCGTGGTG TTCGCGCCCA GCGGCCGCGC CGCGATCACC TACCGCGTGG AGGTCGGGGT GTGTCTGGCC AGCGGCGACC CGGTCGGTGA CCCCAGGTCC TGGCCGCAGG CGATCGACGC GTGGCTCAAG CTGTGCCAGG CCTACGGCTG GGCGCCGGGC GTGATGGGCG CGAGCGCAGC TGGCGCACAA GCCTTTCGAG AGGCCGGGCT CAACGCCCTG CAACTCGGCG ACGAGGCGAT CCTGCATCCG GAGGACTTCC GGTTGTCCGG GCCCGACATG CGGGCCGTCC GGCAGGCGGT GACCCGCGCC CGGCGTGCCG GCGCCACCGT GCGGATCCGC AGGCACCGGG AGCTGCCCGC CGACGAGATG GCCGCGGTCA TCGAGCGGGC CGATGCCTGG CGCGACACCG ACGACGAGCG CGGGTTCTCG ATGGCGCTGG GGCGGCTCGG CGATCCCGCC GACGGGGACT GCCTGCTGGT GGAGGCGGTG CAGGCCGACC AGGTGGTCGC GATGCTGTCG CTGGTGCCAT GGGGCGGCAA CGGAGTGTCC CTCGATCTGA TGCGCCGTTC CCCGCAATCC CCCAACGGCA CCATCGAATT GATGGTCAGC GAGCTGTGCA TGCAGTCCGA GGACATCGGC ATCACCCGGA TCTCGTTGAA TTTCGCGATG TTCCGCTCGG CCTTCGAGCA GGGCGCCCAA CTGGGCGCGG GTCCGGTGGC AAGGCTGTGG CGGTGGCTGC TGGTGTTCTT CTCGCGCTGG TGGCAGCTGG AGACCCTGTA CCGGTCGAAC ATGAAGTACC AGCCCGAATG GGTTCCCCGG TACGCGTGCT ACGACGACGC CAGGCTGGTG CCCCGCGTCG GCGTGGCCTC TGTGATCGCC GAAGGCTTTC TCGTGCTGCC GTTCTCGCGG CGCCATGAAC AGCCGCACAC CGGCCACCAC ATCGCCGCCC CCGGAACACT GGTGGCCACC GGCCTGTTGC ACAGCGACGG CACCGCACCC GACGGGATGG GACTGCAGGC CGACCTGGCC GACGACGACC AGCCGAGGCT GCCCGAGCAG GTCCGGGTCA GGATGGCCAA ACTCAAGGCG CTTCAAGCCC AGGGGGTCGA CGCGTATCCG GTGGCCAACC CGCCCAGCCA CACCGTCGCG CAGGCTCTGG CCGCCGAGGA CGGCGCAGAC GTCGCGGTCG CGGGCCGGGT GCTGCGGTCA CGCGACTACG GCGGCGTGCT GTTCGCCCAG CTCCGCGACT GGTCAGGCGA AACCCAACTG GTGCTGGACA ATTCGCTGCT CGCCGACGGC AGCACCGCGG ACTTCACCCG GACCATCGAC CTCGGTGACC TGATCGAGGT CACGGGCACG ATGGGCCGCA GCCGGTCGGG CAAGTGGTCA CTGCTGGTCA GCGGCTGGCG GCTGATCGGA AAGTGCCTGC GCCCGTTACC GGACAAGTGG AAGGGCCTGA CCGATCAGGA GGCGCGGGTC CGCGCCCGCT ATGTCGATCT CGCGGTCAAC ACCGATGCCC GGGAGCTGAT CCGGGCCCGC AGCGCGGTGC TGCACGCGAT CCGCGAGACC CTGGTCGCCA AAGACTTCCT GGAAGTCGAG ACGCCGATCC TGCAACAGAT TCACGGCGGT GCGAATGCCC GGCCCTTCCT GACCCACATC AACGCCTACG ACCTCGACCT GTATCTGCGG ATCGCGCCCG AGCTGTATCT GAAGCGGTTG TGCGTCGGTG GTGTGGAGCG GGTGTTCGAA CTCGGACGCG CCTTCCGCAA CGAGGGTGTC GACTTCAGCC ACAACCCGGA GTTCACGCTG CTGGAGGCGT ATCAGGCGCA CGCCGACTAC CACGTGTGGA TCGACGGTTG CCGGGAGCTG ATCCAGAACG CCGCGCAGGC GGCCAACGGT GCGCAGGTGT TCATGCGGCC CCGTGCGGAC GGGGTTCTTG AGCCCGTCGA CATCTCCGGT CCGTGGACGG TCAAGACCGT GCACGGCGCG GTGTCCGAGG CGCTCGGCGA GCAGATCGGC CCGGACACCG ATCTGGCCAC GTTGCGCCTG CTCTGCGACC GCGCGGGCAT TCCCTACCTG ACGCACTGGG ACGCCGGAGC GGTGGTGCTC GAGCTGTACG AGCACCTCGT CGAGGACCAG ACCCGGGAAC CGACGTTCTA CAAGGACTTC CCCACCTCGG TCTCTCCGCT GACGCGGCCG CACCGCAGCA TCCCCGGGGT GGCCGAGCGC TGGGACCTGG TGGCCTGGGG TGTCGAACTC GGCACCGCCT ACAGCGAGCT CACCGATCCG GTCGAGCAGC GCCGCCGTCT GCAGGAGCAG TCGCTGCTCG CCGCGGGCGG TGACCCGGAA GCGATGGAGC TCGACGAGGA CTTCCTGCAG GCGATGGAGT ACGCGATGCC TCCGACGGGC GGGCTGGGGA TGGGCGTGGA CCGGGTGGTC ATGCTCATCA CCGGGCGCAG CATCCGCGAG ACCCTGCCCT TTCCGCTGGC AAAACCGCGG TAA
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Protein sequence | MTPTSLARAR PTSSHRWVPA AAGWIVGVIA TLSLLASVSP LVRSLIRVPR EWVDDYIFNF PDTSFAWAFV LALLAAALAA RKRIAWWILV GYMIAAAGWN IAGLAEGRER WFAEVGEVIG LAFHLAAIAF LLLARKEFWA RVRRGALLKA AATLVASMAV GTLIGWGLLE LFPGSLARSD RFLYALNRVS AFAGADAASF SGHPHVFVNA LLGLFGAVAL MVTAIVLFQS QRADNALTGE DESAIRGLLE LYGKNDSLGY FATRRDKAVV FAPSGRAAIT YRVEVGVCLA SGDPVGDPRS WPQAIDAWLK LCQAYGWAPG VMGASAAGAQ AFREAGLNAL QLGDEAILHP EDFRLSGPDM RAVRQAVTRA RRAGATVRIR RHRELPADEM AAVIERADAW RDTDDERGFS MALGRLGDPA DGDCLLVEAV QADQVVAMLS LVPWGGNGVS LDLMRRSPQS PNGTIELMVS ELCMQSEDIG ITRISLNFAM FRSAFEQGAQ LGAGPVARLW RWLLVFFSRW WQLETLYRSN MKYQPEWVPR YACYDDARLV PRVGVASVIA EGFLVLPFSR RHEQPHTGHH IAAPGTLVAT GLLHSDGTAP DGMGLQADLA DDDQPRLPEQ VRVRMAKLKA LQAQGVDAYP VANPPSHTVA QALAAEDGAD VAVAGRVLRS RDYGGVLFAQ LRDWSGETQL VLDNSLLADG STADFTRTID LGDLIEVTGT MGRSRSGKWS LLVSGWRLIG KCLRPLPDKW KGLTDQEARV RARYVDLAVN TDARELIRAR SAVLHAIRET LVAKDFLEVE TPILQQIHGG ANARPFLTHI NAYDLDLYLR IAPELYLKRL CVGGVERVFE LGRAFRNEGV DFSHNPEFTL LEAYQAHADY HVWIDGCREL IQNAAQAANG AQVFMRPRAD GVLEPVDISG PWTVKTVHGA VSEALGEQIG PDTDLATLRL LCDRAGIPYL THWDAGAVVL ELYEHLVEDQ TREPTFYKDF PTSVSPLTRP HRSIPGVAER WDLVAWGVEL GTAYSELTDP VEQRRRLQEQ SLLAAGGDPE AMELDEDFLQ AMEYAMPPTG GLGMGVDRVV MLITGRSIRE TLPFPLAKPR
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