| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_1435 |
|---|
| Symbol | rpsD |
|---|
| ID | 4647106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 1525241 |
|---|
| End bp | 1525846 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639804935 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_952275 |
|---|
| Protein GI | 120402446 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTT ATACCGGACC CGTCACCCGC AAGTCGCGTC GCCTCGGCGT CGACCTGGTC
GGCGGAGATC AGTCCTTCGA GAAGCGCCCC TACCCGCCCG GCCAGCACGG CCGTGCGCGG
ATCAAGGAGA GCGAATACCG CACCCAGCTG CAGGAGAAGC AGAAGGCCCG CTTCACCTAC
GGCGTCATGG AGAAGCAGTT CCGCCGCTAC TACGAGGAGG CCAACCGCCT TCCCGGTAAG
ACCGGCGACA ACCTGCTGCG CATCCTGGAG AGCCGGCTGG ACAACGTCGT GTACCGCGCA
GGCCTGGCCC GCACCCGCCG GATGGCGCGT CAGCTGGTCA GCCACGGCCA CTTCACCGTC
AACGGAGTGA AGGTCGACGT GCCCAGCTAC CGGGTGTCGC AGTACGACAT CATCGACGTC
AAGGACAAGT CGATCAACAC CCTGCCCTTC GAGGTGGCCC GGCAGACCGC CGGCGAGCGC
CCGATCCCGG GCTGGCTGCA GGTCGTCGGC GAGCGTCAGC GCATCCTCGT GCACCAGCTG
CCCGAGCGCG CGCAGATCGA CGTTCCGCTC ACCGAGCAGC TGATCGTCGA GCTCTACTCG
AAGTAG
|
|---|
| Protein sequence | MARYTGPVTR KSRRLGVDLV GGDQSFEKRP YPPGQHGRAR IKESEYRTQL QEKQKARFTY
GVMEKQFRRY YEEANRLPGK TGDNLLRILE SRLDNVVYRA GLARTRRMAR QLVSHGHFTV
NGVKVDVPSY RVSQYDIIDV KDKSINTLPF EVARQTAGER PIPGWLQVVG ERQRILVHQL
PERAQIDVPL TEQLIVELYS K
|
|---|
| |