Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mthe_0895 |
Symbol | secD |
ID | 4462359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosaeta thermophila PT |
Kingdom | Archaea |
Replicon accession | NC_008553 |
Strand | - |
Start bp | 971180 |
End bp | 972856 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639699914 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_843323 |
Protein GI | 116754205 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.433485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTTG CAGGCAGCAT TTCAAAGGAT CCAAGGGTTA TCATTTACAT CGCGGCCGTG GTTCTTGCTC TGATCTTTGT ACTCACTCCG ATACCCGGAT ATGTGGGGAT GAACTCCGGT CTCAAATACG GCCTGGACCT GGAAGGCGGC TCGTGGCTCC AGCTGGAGCT GGAGGGAGCG ATCGTCCAGC TCGACGTTGA CCCAGTTAAT ATCCTGGAGA GGGAGTTCCA GGGCGCCTGG GTCGTGGAGG ATGTCTCCAG GAGAGGCGAC AGTTACGTAA TAACGATAGA CGGAAAGGTT CCGGAGACTC TGCCTGAGGA TCTCGGCTAT CCCGGATCGA GGGTTCTGGT GAGGGACAAC ACTACAAGGA TCACGGTGCC CATCTCCCCT GAAGGCGTTG TTGTGAACTA CCTCAAAACG CGCCTCGATT CTGATGTCAG GATCGTTGGG GTCGAGCCGG TGCGCTACGA GATAAGGTCG AATGTGACAA GAGAGCAGCT TGACTCCATA CTCTCAGAGG TCAACGGTAG GGTTGCTCCG GGTGAGGACA CATTCATCAG CGGTCTCACA CCCGAGACGG TCGATGAGAC CAAGGAGATC CTCGACAAGA AGCTCAACCG TCTCGGGCTC AAGGATATCA AGGTGAGGGT AGTCGATAAC AGGTTTATAA CAATAGATCT CGCTGGTGTC AACGTCTCAA CCGCCGAAGA GGTCGTCGGC AAGCCTGGAA AGTTCGAGAT AAGGATCCAG GTTGGTCCGA ACGAGACCAG GCATGTCGTG TACGGGGATG CTGTGGAGTC TGTGGATCTT CCGAGAGGAG ACAGGAGCGG GATGTGGGGG GTGCCCTTCA CCCTGTCAGA GGAGGGCGCG CTCGCATTCC AGCGGATAGC CAAGGAGGTT GGAGCCACAA GGAACCCGAA GGCGCATGAG GTCTCGATGT ACCTGGACAA GGATGAGATC TTCAGCGCTC CTCTTGCTCC TGAGCTCGCA TCAGCTCTCG ATAAAGCACC GATGAGAAAT CTGGTCGCAG AGGTAGGCAC GGGTGATGCA GGATCGAGGA AGGCGAAGGA GCTGTACATA CATCTGAGAG AGGGCGCGCT GCCCGTGAAC GTCAAGATCA TAGGCTCCGG GCAGGTTGAT GCTGCTTTGG GATCACAGTT CAAGTTCCAG GTGGCTCTTG CTGGGATCCT CGCGATACTT GCTGTGGGTC TAATGGTCTT TTACAGATAC AGAGAGAGAA GGATAGTGCT GCCGATCGTC TGCACATCAT TCAGCGAGGT CATCATGATG CTCGGCATAT GGTCGGCGGC CGGATGGCAG CTCGATCTCG CGAGCATCGC CGGAATAATA ATGGTGATAG GTACAGGTGT TGACCACCTC TTCATAATAA CAGATGAGCT TCTCCATGGA GAGAGGATCA CGGAGAGGAG CGAGCAGGAG GCAAAGGGGG TTCTGCTGAC GGGCAAGATA TACCTCGCGA GGCTCTCCCG GGCGTTCTAC ATCATCCTGG GGGCGGCTGT AACGACCATC GCTGCGATGA TACCCCTGCT CTGGATGGGG TTCGGCGCGC TGATGGGCTT CGCCCTGATC ACCATAATCG GGGTTCTGAT AGGCGTGGGA ATAGCAAGAC CTGCATACGG CAGGATTATC GGCTACATCC TAGGAGAGGC CGCGTAG
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Protein sequence | MSLAGSISKD PRVIIYIAAV VLALIFVLTP IPGYVGMNSG LKYGLDLEGG SWLQLELEGA IVQLDVDPVN ILEREFQGAW VVEDVSRRGD SYVITIDGKV PETLPEDLGY PGSRVLVRDN TTRITVPISP EGVVVNYLKT RLDSDVRIVG VEPVRYEIRS NVTREQLDSI LSEVNGRVAP GEDTFISGLT PETVDETKEI LDKKLNRLGL KDIKVRVVDN RFITIDLAGV NVSTAEEVVG KPGKFEIRIQ VGPNETRHVV YGDAVESVDL PRGDRSGMWG VPFTLSEEGA LAFQRIAKEV GATRNPKAHE VSMYLDKDEI FSAPLAPELA SALDKAPMRN LVAEVGTGDA GSRKAKELYI HLREGALPVN VKIIGSGQVD AALGSQFKFQ VALAGILAIL AVGLMVFYRY RERRIVLPIV CTSFSEVIMM LGIWSAAGWQ LDLASIAGII MVIGTGVDHL FIITDELLHG ERITERSEQE AKGVLLTGKI YLARLSRAFY IILGAAVTTI AAMIPLLWMG FGALMGFALI TIIGVLIGVG IARPAYGRII GYILGEAA
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