| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_0886 |
|---|
| Symbol | |
|---|
| ID | 4461843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 960680 |
|---|
| End bp | 961795 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639699905 |
|---|
| Product | replication factor A |
|---|
| Protein accession | YP_843314 |
|---|
| Protein GI | 116754196 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1599] Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACGATC AGGTGGAGGA GATCTTCAGG CAGGTCTCAG ATAGGATAAG CGTTGAGGAG
TTCGAGGCCA GGGTGAACGA GAAGGTCTCC CTGATGGGCG GGCTCTGCGA TCCGCTCACT
GCAGCCATGC TGGTCGCACA TGAGCTCGGT GCTGGCGAGA TCCTGACGAA GATAAAGGAT
ATCAGGCCCG AGTCAGGGGC TGTCACATTC ACAGGCAGGG TTGTTCATAT CTCAGAGGTG
AGGGAGTTCA GCCGGTCGGA TGGATCCATT GGAAGGGTCG CGTCTCTTAC AGTGGGTGAT
GAGACCGGGA TGATAAAGGT GACACTCTGG GATGATGCGA CTGATCTTGT AGTCTCAGGG
GATATCAGGG TCGACCAGTG CCTCAAGGTC AGAGGCTTCC CCAGGCTCGG AAGATCTGGG
ACGGAGATAA GCATCGGCAG AGGCTGCAGC ATCCAGGAGA TCGACAGCGA CATAAAGGTC
AGGGTCGAGC CTCTGAAGAT CGCTGAGATC AGGCCGGATA TGGGCGAGAT CAGCATAATC
GCAAGGGTAA TAGATCCTGG GAAGGCTAAG GAGTTCACCA GAAAGGATGG GTCGAAAGGG
TTCGTCAGAA GCATGCTGCT CGGCGATGAT ACTGGGAGCA TAAATATCAC GCTCTGGAAC
GATCATGCCC TCATCGATGC TTCGGAGGGG GATGTTCTCG AGGTGATCAA CTGCAGCTCC
AGGGAGAGAT ACGGATTCAT CGAACTCCAG ACCAGCAGGT ACACGGTGAT AAGAAAGAGT
TCCTCTGAGA TCAAGTACTC CGAGCGCTTC ACGCCCATCG CGGATCTCAG GGTGGGGGAG
ATCTGCAATA TAGCTGGGTA TCTCACAGGG ATCGGTGAGC TAAGGGAGTT TCAGAGGGAC
GATGGCACAA AAGGATATGT CACGAGCATA AACGTCACAG ACGAGACAGG ACGTGTGAGG
GTCTCTCTCT GGGGGGATCT TTACCGGCTG CTGGAGAATG CGGATCTCGG CTGCAGGGTC
GAGATCATGG GCGGACAGGT GAAGAACGGC TGGAACGGCG AGCTGGAGGT CAGCTGCGGC
TGGAGGAGCA GGATCACTTT CGCGCCGCCT GGATAA
|
|---|
| Protein sequence | MDDQVEEIFR QVSDRISVEE FEARVNEKVS LMGGLCDPLT AAMLVAHELG AGEILTKIKD
IRPESGAVTF TGRVVHISEV REFSRSDGSI GRVASLTVGD ETGMIKVTLW DDATDLVVSG
DIRVDQCLKV RGFPRLGRSG TEISIGRGCS IQEIDSDIKV RVEPLKIAEI RPDMGEISII
ARVIDPGKAK EFTRKDGSKG FVRSMLLGDD TGSINITLWN DHALIDASEG DVLEVINCSS
RERYGFIELQ TSRYTVIRKS SSEIKYSERF TPIADLRVGE ICNIAGYLTG IGELREFQRD
DGTKGYVTSI NVTDETGRVR VSLWGDLYRL LENADLGCRV EIMGGQVKNG WNGELEVSCG
WRSRITFAPP G
|
|---|
| |