Gene Msil_3563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsil_3563 
SymbolsdhA 
ID7092421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylocella silvestris BL2 
KingdomBacteria 
Replicon accessionNC_011666 
Strand
Start bp3923014 
End bp3924852 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content64% 
IMG OID643466854 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_002363814 
Protein GI217979667 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTAG GCAGCACGTC GAACGGCGCC GCCGGACCGG CGCGGCTTGG AGCCGCTTAT 
CCGATCATCG ATCACAGCTT TGACGTGATC GTCGTCGGCG CCGGGGGCGC CGGCCTTCGC
GCCACCGTCG GCTGCTCGCA GGCCGGACTT CGCACGGCCT GTATCAGCAA GGTCTTTCCA
ACCCGCTCGC ACACGGTTGC GGCGCAGGGC GGCGTCGCCG CATCGCTCGC CAATATGGGG
CCGGACAATT GGAAATGGCA CATGTACGAC ACCGTCAAGG GGTCGGACTG GCTGGGCGAT
CAGGATTCGA TCGAATATCT CTGCCGCAAC GCGCCGGCCG CCGTCTATGA ACTCGAACAT
TGGGGCGTGC CGTTCTCCCG CACGGAAGAC GGCCGCATCT ATCAGCGCCC ATTCGGCGGC
ATGACCACCG ATTTCGGCAA GGGCCCGCCG GCGCAGCGCA CCTGCGCCGC CGCCGACCGC
ACCGGCCACG CCATGCTGCA CACGCTGTAT GGCCAGGCGC TGCGCTATAA CACTGAATTC
TTCATAGAAT ATTTCGCCAT CGACCTCATC ATGGAGGACG GCCGCTGCCG CGGCGTCGTC
TGCCTGAAAC TCGATGACGG CACCATCCAC CGCTTCCGCG CGCAGCTCGT CATTCTCGCC
ACCGGCGGCT ATGGCCGCGC CTATTTCTCG GCGACCTCAG CGCATACTTG CACCGGCGAC
GGCAACGCCA TGGTTTTGCG CGCCGGACTG CCGCTGCAGG ACATGGAATT CGTGCAATTC
CATCCGACTG GCATCTATGG CGCAGGCTGC CTCATCACCG AGGGCGCGCG CGGCGAAGGC
GGCTATCTGA CCAATGGCGC CGGCGAGCGC TTCATGGAGC GCTACGCGCC CTCCGTCAAA
GATCTCGCGC CGCGCGACAT GGTCTCACGC GCCATGACGA TGGAAATCCG CGAAGGCCGC
GGCGTCGGCA AGAACAAGGA TCACATCCAC CTCCATCTCG ATCATCTCGA CCCGAAAATC
CTGCATGAGC GTCTGCCCGG CATTTCCGAA AGCGCCAAGA TTTTCGCTGG CGTCGACCTC
ACCAAGGCGC CGATCCCGGT GCTGCCGACG GTGCATTACA ATATGGGCGG CATCCCGACC
AATTATCACG GCGAAGTCGT CATCAAGAAG GACGGCGACC CGGACGTGAT CGTGCCCGGC
CTGATGGCGC TTGGCGAGGC CGCCTGCGTC TCCGTGCATG GCGCGAACCG GCTCGGCTCC
AATTCGCTGA TCGATCTTGT CGTGTTCGGC CGCGCCGCCG GCATCCGCGC CGCCGAGATC
GTCACCGCCG GCGCGAAACA GGCCGAATTG CCGGCCGACT CGGCCGATAA GGCGCTCGCC
CGGCTCGACG GGTTGCGCTT CGCCAAGGGC TCGATCCCGA CGGCGGAGCT GCGGCTGCGC
ATGCAGAAGG TGATGCAGGA CCATTGCGCC GTTTACCGCA CCGGCGAGGT TCTGGAAGAG
GGCTCGAAAC GGATTCATGA GGTATGGCGA GCGAAGGATC AGGTCGGCGT CACCGACCGT
TCGCTGATCT GGAATTCCGA TCTCGTCGAG ACGCTGGAAT TCGACAATCT CATCATTCAG
GCCGTCGTCA CCATGGACGG CGCCGTCAAC CGCACCGAAT CGCGCGGCGC CCACGCGCGT
GAAGACTACA CACAGCGCGA CGATGTGAAC TGGATGAAGC ATACGCTGGC CTCGATCGAT
CCGGACGCAC ATTCGGTCTC GATCGATTAC CGCCCCGTGC ACAGCTACAC CATGACCAAT
GAGATGCAGT ACATCGAGCC GAAGGCGCGG GTGTATTGA
 
Protein sequence
MALGSTSNGA AGPARLGAAY PIIDHSFDVI VVGAGGAGLR ATVGCSQAGL RTACISKVFP 
TRSHTVAAQG GVAASLANMG PDNWKWHMYD TVKGSDWLGD QDSIEYLCRN APAAVYELEH
WGVPFSRTED GRIYQRPFGG MTTDFGKGPP AQRTCAAADR TGHAMLHTLY GQALRYNTEF
FIEYFAIDLI MEDGRCRGVV CLKLDDGTIH RFRAQLVILA TGGYGRAYFS ATSAHTCTGD
GNAMVLRAGL PLQDMEFVQF HPTGIYGAGC LITEGARGEG GYLTNGAGER FMERYAPSVK
DLAPRDMVSR AMTMEIREGR GVGKNKDHIH LHLDHLDPKI LHERLPGISE SAKIFAGVDL
TKAPIPVLPT VHYNMGGIPT NYHGEVVIKK DGDPDVIVPG LMALGEAACV SVHGANRLGS
NSLIDLVVFG RAAGIRAAEI VTAGAKQAEL PADSADKALA RLDGLRFAKG SIPTAELRLR
MQKVMQDHCA VYRTGEVLEE GSKRIHEVWR AKDQVGVTDR SLIWNSDLVE TLEFDNLIIQ
AVVTMDGAVN RTESRGAHAR EDYTQRDDVN WMKHTLASID PDAHSVSIDY RPVHSYTMTN
EMQYIEPKAR VY