| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_3243 |
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| Symbol | |
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| ID | 7090658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylocella silvestris BL2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011666 |
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| Strand | + |
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| Start bp | 3557595 |
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| End bp | 3559613 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 643466551 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002363512 |
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| Protein GI | 217979365 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.291091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACGATA GAGTTGGCGC CGCGACATTC GAAGCTCAGC CGCGCGCCGG GTTCGGATCG
GTCGAGGCCG CGATTTCCCG AGCTCGCGAG GCTTTGCTGG CGGTGCAGAA GCCGGACGGC
CATTTTGTCT TCGAGCTCGA AGCCGATGTG TCGATTCCGG CCGAATATAT TCTATTCCGG
CATTTTCTCG GCGATCCGGC CAAGACGGAA ATCGAGCGAA AGATCGGCGT CTATCTGCGC
CGGCGTCAGA CGGCGGCGGG CGGATGGCCG CTGTTCGCCG AGGGCGTTTT TAATGTCTCC
AGCTCGGTCA AAGCCTATTT CGCGCTGAAA ATCATCGGCG ACGATCCCAA CGCCCCGCAT
ATGGCGAAGG CCCGCAACGC CATTCTCGCT CATGGCGGCG CCGCCCAATC CAATGTCTTC
ACCCGATCGC TGCTCGCGCT CTATGGCGAA GTCCCCTGGC GCGCCGTGCC GGCGATGCCG
GTCGAGATCA TGCATCTGCC GCGCTGGTTC CCGTTCCATC TGAGCAAGGT TTCCTATTGG
GGCCGCACCG TCATCGCGCC GCTGATCGTG GTCCATGCCC TGAAGCCGCG CGCGAAGAAT
CCGCGCAAGA TTTCGGTTTC GGAGCTTTTC GTCGCGCCGG CCGAAACCGT TTCGCGGTGG
CCTGGGGCGC CGCACAAGTC CTTTCCCTGG ACGACCATCT TCGGCGCGAT CGACCGCGTG
CTGCATAAGA CCGAGCCGTT GCTGCCGGCC CGCTCGCATC AAACCGCCAT CGATAAGGCG
GTCGCCTTTG TCACCGCGCG CCTCAACGGC GAGGACGGGC TTGGCGCGAT TTATCCGGCG
ATGGCCTATT CCGCGATGAT GTTTTTCGCG CTCGGCGCGC CGCTATCCGA TCCGCGGATC
GTGCAGATCC GAAAGGCGAT CGACCGTCTG CTGGTCATCA AGGACGGTGA AGCCTATTGC
CAGCCCTGCG TTTCCCCCGT CTGGGACACC GCGCTCGCAA GCCACGCTCT GATGGAGAGC
GCCGGACAGC GGCCCGAGGC GAGAACCGCC CCGGCTGCGG CGGCTGTCTT CGAAGCGCTG
GATTGGCTGA AGCCGCTGCA GGTGCTTGAC GTCAAGGGCG ACTGGGCGAC GCAAAACCCC
GACGTACGGC CGGGCGGCTG GGCGTTTCAA TACGCCAATC CGCATTATCC CGATCTCGAC
GACACCGCCG TCGTCGTGCT GGCGATGGAT CGCGCCGTCA AGACCTCGCC CCTGATCGCG
GGGGAGGAAG AGACCGCCTA TGTCGAGGCG ATCTCGCGCG CGCGCGAATG GATTCTTGGG
CTGCAGAGCG CCAATGGCGG CTTCGGCGCC TTCGACGCCG ACAATGACCG CGATTATCTG
AACTATATCC CCTTCGCCGA TCACGGCGCG CTGCTCGATC CGCCGACCGC CGACGTCACG
GCCCGCTGCG TCTCGATGCT TGGCCAGCTT GGCGAGAGGC CGGAGACGAG CCCGGCGCTC
GCCCGCGCCA TTGACTACCT TTTGTCCGAG CAGGAGGAGG AGGGCAGCTG GTTCGGCCGC
TGGGGCATGA ATTATATTTA TGGCACATGG TCAGTGCTGA GCGCCTTCAA CGCCGTTGAA
CGTCCGGCCG ACTGCGCCGC GACGCGGAAG GCGGCGGCGT GGCTGAAGCG CATCCAGAAC
CCCGACGGCG GCTGGGGCGA AGACGGCGAG AGCTATGCGC TCGGCTATAA GGGCTATAAT
CCGGCGCCCA GCACCGCCTC GCAGACGGCA TGGGCGCTGC TGGCGCTGAT GGCGGCCGGC
GAGGTCGACG CGCCGGAAGT CGCCCTCGGC CTCGACTATC TCGTCAGCAC GCAGGCGGAC
GATGGGTTCT GGGATGAGGC GCGCTTTACC GCCACCGGTT TTCCCCGCGT GTTCTATTTG
CGCTATCACG GCTACGCCAA ATTCTTTCCC CTCTGGGCGA TGGCGCGCTA CCGCAATCTG
AAAAGCGGCA ATCGGCTCAA GACGCAGTTT GGGATGTGA
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| Protein sequence | MDDRVGAATF EAQPRAGFGS VEAAISRARE ALLAVQKPDG HFVFELEADV SIPAEYILFR
HFLGDPAKTE IERKIGVYLR RRQTAAGGWP LFAEGVFNVS SSVKAYFALK IIGDDPNAPH
MAKARNAILA HGGAAQSNVF TRSLLALYGE VPWRAVPAMP VEIMHLPRWF PFHLSKVSYW
GRTVIAPLIV VHALKPRAKN PRKISVSELF VAPAETVSRW PGAPHKSFPW TTIFGAIDRV
LHKTEPLLPA RSHQTAIDKA VAFVTARLNG EDGLGAIYPA MAYSAMMFFA LGAPLSDPRI
VQIRKAIDRL LVIKDGEAYC QPCVSPVWDT ALASHALMES AGQRPEARTA PAAAAVFEAL
DWLKPLQVLD VKGDWATQNP DVRPGGWAFQ YANPHYPDLD DTAVVVLAMD RAVKTSPLIA
GEEETAYVEA ISRAREWILG LQSANGGFGA FDADNDRDYL NYIPFADHGA LLDPPTADVT
ARCVSMLGQL GERPETSPAL ARAIDYLLSE QEEEGSWFGR WGMNYIYGTW SVLSAFNAVE
RPADCAATRK AAAWLKRIQN PDGGWGEDGE SYALGYKGYN PAPSTASQTA WALLALMAAG
EVDAPEVALG LDYLVSTQAD DGFWDEARFT ATGFPRVFYL RYHGYAKFFP LWAMARYRNL
KSGNRLKTQF GM
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