| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msil_0137 |
|---|
| Symbol | |
|---|
| ID | 7090453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylocella silvestris BL2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011666 |
|---|
| Strand | + |
|---|
| Start bp | 132283 |
|---|
| End bp | 133890 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643463471 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_002360481 |
|---|
| Protein GI | 217976334 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAG ACTTTTCGCC AAAAGAGCGA CTGATCCTGT TCGACACCAC TTTGCGCGAT
GGCGCGCAGA CGGCCGGCGT CGATTTCTCG CTGGCCGACA AGCGCCATAT CGCCGCGCTG
CTCGACGGGC TTGGGGTGGA TTATATCGAG GGCGGCTATC CAGGCGCCAA TCCGGCCGAT
ACGGCGTTTT TTCAGGATCC GCCGCGCTTC GGCCACGCGC GTTTTGCCGC CTTCGGCATG
GTCAAACGCG CCGGCCGCTC GCTCGACAAT GATCCCGGCC TTTCCATGCT GTTCGAAGCC
AAGGCCGACG CCATCACTTT CGTCGCCAAG GCGTGGGACT ATCATGTTCG CGTCGCGCTC
GGCGTGACGC TTGAAGAAAA CCTTGCTTCG ATCGGGGAGT CGATCGAGGC GGCGAAATCG
CGCCAGCGCG AGGTCATTCT CGACTGCGAG CATTTCTTTG ACGGCTACAA GGCCAACCCC
TCTTATGCGC TGTCCGTCGT CCTGACCGCG CTTCAGGCAG GCGCGCGCTG GGTTGTTCTA
TGCGACACCA ATGGCGGGAC GCTGCCGCAT GAAGTCGAGC GCATTGTTGC CGAGGTTTGC
GCGAGGGCCC CCGGCGACCG ACTCGGCATT CACGCCCACA ATGACACAGA GAACGCGGTG
GCGAACTCGC TTGCGGCGGT GCGGGCGGGC GCAAGGCAGA TCCAAGGGAC GCTGAACGGG
CTTGGCGAGC GCTGCGGCAA CGCCAATCTG ACGTCCATCA TTCCAACCCT GTTGCTGAAG
CCGGATTTCT CCGAAAAATT TGACATCGGC GTGCCGATGG AGAGGCTTTC GAGCCTCGCC
AAGATCAGCC ACACGCTCGA TGAGCTGTTA AATCGCGCGC CGAACCGCCA GGCGCCTTAT
GTCGGCGCCT CGGCTTTCGC GACAAAGGCG GGCATCCACG CCTCCGCCGT GATGAAGGAG
CCGCGAACCT ACGAGCATGT GGCGCCGGAA TCCGTCGGCA ACAAGCGCCG CCTGCTCGTG
TCGGATCAGG CCGGCAAGTC GAACATTCTC GCCGAGCTCG AACGCATCGG CGTAAAACTC
GACAAGGACG ATCCGAGGCT TGGCCGGCTG CTCGACGAGG TCAAGCAGAA GGAGGCGCTC
GGCTATGCCT ATGAGGGGGC CGACGCCTCC TTCGAGCTGC TGGCGCGGCG CGTCCTCGGC
GACATTCGCG ATTTCTTCGA GGTCGAGCGT TTTCGCGTCG ACGTCGAGCG CCGCCACAAT
GCGCAGGGCG ATCTCGTCAC GGTTTCGGAG GCGGTGGTCA AGGTGCGCAT CGACGGCGAA
ACTTCGATCT CGGCCGCCGA GGGGGAGGGT CCGGTCAATG CGCTCGATCT CGCGCTACGC
AAGGATCTTG GCCGCTATCA GCGCTTCATC GAGGATCTTG AGCTCGTTGA CTATCGCGTG
CGCGTGTTCC AGGGCGGCAC GGATGCGGTG ACGCGCGTGT TGGTGGAATT CCGCGACGCC
TCCGGCGAGA CCTGGTCGAC CGTCGGCGTC TCCGCCAACA TCATCGACGC CTCGTTTCAG
GCGCTGACCG ACGCCATCAC CTACAAGCTG CTGAAGGCGG GGGCGTAA
|
|---|
| Protein sequence | MTRDFSPKER LILFDTTLRD GAQTAGVDFS LADKRHIAAL LDGLGVDYIE GGYPGANPAD
TAFFQDPPRF GHARFAAFGM VKRAGRSLDN DPGLSMLFEA KADAITFVAK AWDYHVRVAL
GVTLEENLAS IGESIEAAKS RQREVILDCE HFFDGYKANP SYALSVVLTA LQAGARWVVL
CDTNGGTLPH EVERIVAEVC ARAPGDRLGI HAHNDTENAV ANSLAAVRAG ARQIQGTLNG
LGERCGNANL TSIIPTLLLK PDFSEKFDIG VPMERLSSLA KISHTLDELL NRAPNRQAPY
VGASAFATKA GIHASAVMKE PRTYEHVAPE SVGNKRRLLV SDQAGKSNIL AELERIGVKL
DKDDPRLGRL LDEVKQKEAL GYAYEGADAS FELLARRVLG DIRDFFEVER FRVDVERRHN
AQGDLVTVSE AVVKVRIDGE TSISAAEGEG PVNALDLALR KDLGRYQRFI EDLELVDYRV
RVFQGGTDAV TRVLVEFRDA SGETWSTVGV SANIIDASFQ ALTDAITYKL LKAGA
|
|---|
| |