| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2135 |
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| Symbol | |
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| ID | 5104874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 2055499 |
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| End bp | 2056482 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640508026 |
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| Product | geranyltranstransferase |
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| Protein accession | YP_001192198 |
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| Protein GI | 146304882 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0551821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000978796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATCTAG ACCAATATTT TGAGGAAATA GTAGCTAAAG TCAATGCAAC CATGGACAGT
TTTCTTCACG GCGACACTAG GGAGCTCTAT GAAGCGTCAC GATACCTGAT AAGTGCTGGA
GGAAAGAGAC TGAGGCCCCT AGTAGTGGTA CTTTCCTCAG ACCTGCTAGG TGGTGAAAGA
CACAGGGCCA TACTCGCAGG AGCCGCGGTT GAGGTTCTTC ATAATTTCAC ACTAATACAC
GACGACATAA TGGACCAGGA CACGACAAGG AGGGGTATTC CCACGGTTCA CGTGAAATGG
GGAATCCCCA CTGCGATCCT GGCGGGAGAT CTTTTACACG CTAAGGCCTT TCAAATCCTT
ACAGAATCGA TCAAGGGTTT GAGCGGTGAC GTAGCCTATA AGGTGTTGGA CTGCTTCTCG
AGATCAGTTA TAGTGGTTTC CGAGGGGCAG GCAATGGATA TGGAATTCGA GAAGAGGTGG
GACATAAGGG AGAAGGACTA CCTCGAGATG ATAAGGAGGA AGACCGCTCA ACTGTTTGCG
TGTTCAGCCT ATCTGGGCGG AGTGCTAGCT GGTGGTAGTG AAGAGGAAGT GAACAATCTC
TACGAGTTCG GTGAGAAGAT GGGGATAGCG TTCCAGATAG TTGACGACAT TCTTGGTATT
ACTGCTGACG AGAAGGAGCT TGGAAAACCA CTTTACAGCG ATATTAGGGA AGCTAAGAAG
ACCCTCCTCG TTATAAAATC GCTTGAGAGG GCTAACAGCG AAGAGAGGAA GATCATCATG
GAGGGTCTAG GATCAAACGA CATGTCCAAG TTAAAGGCCA CAGCTTCCCT CATAACTGGA
CTTTCCCTTG ATTACGCCTA CGAGTTGGCA AGGAAATATC ACGAGGAGGC ATTGGCTCAC
CTCTCAAGGG TAACTCCTAG AAACGAAAAC GCCGTGAAAG GCTTACGAAG CATAGCTGAC
ATAGTCATTA AAAGGCGAAA ATAG
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| Protein sequence | MDLDQYFEEI VAKVNATMDS FLHGDTRELY EASRYLISAG GKRLRPLVVV LSSDLLGGER
HRAILAGAAV EVLHNFTLIH DDIMDQDTTR RGIPTVHVKW GIPTAILAGD LLHAKAFQIL
TESIKGLSGD VAYKVLDCFS RSVIVVSEGQ AMDMEFEKRW DIREKDYLEM IRRKTAQLFA
CSAYLGGVLA GGSEEEVNNL YEFGEKMGIA FQIVDDILGI TADEKELGKP LYSDIREAKK
TLLVIKSLER ANSEERKIIM EGLGSNDMSK LKATASLITG LSLDYAYELA RKYHEEALAH
LSRVTPRNEN AVKGLRSIAD IVIKRRK
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