Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2110 |
Symbol | |
ID | 5104403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 2030667 |
End bp | 2031359 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640507999 |
Product | DNA-(apurinic or apyrimidinic site) lyase |
Protein accession | YP_001192173 |
Protein GI | 146304857 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0177] Predicted EndoIII-related endonuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGTGTG AAGGAAAGGA GATTGTAAGT AGGTTAGATA GAGCCTACAA GATTAAATCT GAGGATTTCC TGGCGATAGA AATATGGGAG AAAACTAGGG ATCCTTTCAA GGTCCTTATA GCGACCATTT TGACCCAGAA TACCACAGAT AAGGGAGCCA AGAAAGCGTA CGAGGAACTG GATAAAGAGG TTGGAATAAC TGCCGAAGGG CTTAGTAGAG CCGATCCAGA GGTGATAAAG AGGTGCATTA GAAAGGTCGG CCTTCACAAT AACAAGACTA AGGTGATTAA GGAAGTGTCA ACGAAAATTT TGAATGAGTA TGGTGGAGAT ATCAACAAGG TACTTGACCT AGGGTTACCA AAGGCTAGGG AGAAATTGGT GGAGCTCCCA GGCGTTGGGA AGAAGACTGC AGACGTCTTA TTAATAACTT GCAGAGATTA TCCAGTGTTC CCCATAGACA CACATATCTT CAGGATTTCG AAAAGGCTTG GTATTGATGG AAACTATGAC AAGGTAAGTT CGTTCTGGAG AGAAGTTTCG GATAATCTCA GGTTGAGGGC ACATCTACTA CTCATTACTC ACGGTAGAGC TACATGCAAA GCAATTAAAC CTAAATGTGA CACTTGTGTA CTTAATGACT GCTGCGAGTA TTACGCTAGA CTACGTGGAT CCCAGGGACC TGAAACCTCA TGA
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Protein sequence | MKCEGKEIVS RLDRAYKIKS EDFLAIEIWE KTRDPFKVLI ATILTQNTTD KGAKKAYEEL DKEVGITAEG LSRADPEVIK RCIRKVGLHN NKTKVIKEVS TKILNEYGGD INKVLDLGLP KAREKLVELP GVGKKTADVL LITCRDYPVF PIDTHIFRIS KRLGIDGNYD KVSSFWREVS DNLRLRAHLL LITHGRATCK AIKPKCDTCV LNDCCEYYAR LRGSQGPETS
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