| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1589 |
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| Symbol | |
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| ID | 5103953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1536160 |
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| End bp | 1536582 |
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| Gene Length | 423 bp |
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| Protein Length | 140 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640507476 |
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| Product | UspA domain-containing protein |
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| Protein accession | YP_001191668 |
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| Protein GI | 146304352 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000251397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0131871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCGATT CAATTCTCGT GCCATTCGAT GGATCTGAAC ACTCAAAGAG GGCTCTTCAG
GTTGCCATAG ACATTGCGAA GAGGTATGGT AGTGTGATAT ATGTTATAGA AGTAGTAGAT
GAGGCCATAT TCTACGGCTC CGGCGTCTTA CCTCCTTTGA ATGCCGTAAA GGCCATGGAG
AAAAAGGCAA AAGATGACTT AGATTACGCG TTAAAGGAGA TAACAAATGC GGGACTGAAG
GGTGTAGGTG AGGCATTGGA AGGGGATCCG GCTAGCGTTA TACTTGATTA TGTTCAGAAG
AACGATATAA AGCTAATAGT GATGGGAAGC AGGGGACTAT CTACGATGAA AAGAGTCCTG
TTGGGGAGTG TCTCTACCAG GGTTGTCCAG GAGTCTAAAG TCCCAGTCCT GGTAGTTAGA
TGA
|
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| Protein sequence | MFDSILVPFD GSEHSKRALQ VAIDIAKRYG SVIYVIEVVD EAIFYGSGVL PPLNAVKAME
KKAKDDLDYA LKEITNAGLK GVGEALEGDP ASVILDYVQK NDIKLIVMGS RGLSTMKRVL
LGSVSTRVVQ ESKVPVLVVR
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