| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1558 |
|---|
| Symbol | |
|---|
| ID | 5104003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1514918 |
|---|
| End bp | 1515985 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507444 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001191637 |
|---|
| Protein GI | 146304321 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2516] Biotin synthase-related enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0417812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGA GAATAAATGA AGTAAAATCC ATAAGCAGTC CTGATTGGGT AAGGCTCAGC
TTCGGGGCAG ACATGGTACT AGGTTTTTCA CCCGGAAAGT TTCTGAAGGG AGCTCTGAAC
ACTACCATAA ACCTTCTCCA GTACTATCCA GATGGTTGTA AGGCAAACTG CATCTATTGC
GGTCAAGCCA GGGAGGTCAG CCAAGGCCCT GAGTGCAAGA CCCTAATAAG GGTGGAGTGG
CCATTGCGTC CCTTGGATGC AGTCCTTGAT AGGATAAAGG AGAGACAGGG AGATCCGAAC
TACGGACTAC AGAGGATCTG CGTTGGCCAA CTAGCTCATC CCAGGGCATC TCCCGACTCT
GTGGAGATAA CAAGGAGAAT CAGGGAGAAG GGAATAGAAC TTCAAATCTC CGAGTTAGTT
ACAGCCACCT ACACAAGCAA GGACGATATG CGCAAGATGA AGGAGGCAGG TGGAAACATG
ATAGACGTTG CCATAGACGC TGCTAGCAAG AGGGTATTTG ATGCCGTGAG AGGAAAACCC
GTGAGAAGCA TGCACAGCTG GGAAAGATAT ATCCACGCCA TAGATGACGC AGTTGAGGTC
TTTGGTAAGA AGAACGCTGG AATACATCTA ATAATTGGGC TTGGCGAAAC CGAGCAGGAG
GCGGTTTCCC TTATGCTCTA CGCCCATTCC AGGGGTGCCA AGATAAGCCT CTTTGCCTTC
TATCCGGAGG AATCCACACC CATGGAGAAT AGGAAGCCAG TCCCAGTCCA CGTTTACAGG
AGGATGCAGA TCTCCAGGTG GTTAATAGAG AACGACTTGG TTAAGCCTGA GGACTTCGTT
TTCGACGAAA AGGGACAGCT GGTGGACATC AACCTGAGTT CCGATATCAC TCTCCAAGAA
CTATCAGGTG CATTCCTGAC TAGCGGATGC CCTGGGTGCA ATAGGCCCTA CTCGAACGAG
AGACCTGGAG ATAGGTTGAG GAACATTCCA TGGTATCCAA ACGAGAAACA GACGTTAAAT
GCGATTAAGT CCTCAAGATT ACCTCTAGCG AAGAGGTTCC TGAACTAA
|
|---|
| Protein sequence | MNLRINEVKS ISSPDWVRLS FGADMVLGFS PGKFLKGALN TTINLLQYYP DGCKANCIYC
GQAREVSQGP ECKTLIRVEW PLRPLDAVLD RIKERQGDPN YGLQRICVGQ LAHPRASPDS
VEITRRIREK GIELQISELV TATYTSKDDM RKMKEAGGNM IDVAIDAASK RVFDAVRGKP
VRSMHSWERY IHAIDDAVEV FGKKNAGIHL IIGLGETEQE AVSLMLYAHS RGAKISLFAF
YPEESTPMEN RKPVPVHVYR RMQISRWLIE NDLVKPEDFV FDEKGQLVDI NLSSDITLQE
LSGAFLTSGC PGCNRPYSNE RPGDRLRNIP WYPNEKQTLN AIKSSRLPLA KRFLN
|
|---|
| |