| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1414 |
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| Symbol | |
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| ID | 5104624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1380888 |
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| End bp | 1381994 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640507303 |
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| Product | D-proline dehydrogenase |
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| Protein accession | YP_001191496 |
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| Protein GI | 146304180 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00000836219 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0027626 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGTAG GAATTGTGGG TGGCGGTATT GTTGGGTTAA TGTCAGCCTA TTTTCTAGCT
AAGGAGGGAG TCTCCGTCAC GGTATATGAC CCTGCTCCTG GTAAGTACTC TATTCATGCA
GCAGGGCTGA TAGAGCCATA CCGTTTTGAC AGGATTAACA CAACCTCCAT GATAGCGAAG
ATGTTACGTT TCATGAGGAG GGGGGTCACA GAGGTAAGGC AACTTAATAA AATGTGGGTA
GTCGAGCTTC TTTCCTCCCT AAACAAGTCA CCCCCTCAGG AGGCATGGGA CCTAATGAGG
GAAATGGCGA GACTATCCCT GGACACTTAC GCCCAAATGG CAGAGGAAAG AAACGATTTC
GATTATCATA ACGACGGTCT CCTAGAGGTT TATACAAGTG AGGAAGAGCT GGAGAAGGGA
GAGAAGGAGG AGAAACAGAG TCCCTTTTCG CCCAAGTTCG AGGTGACCGA AGTTCCAGGG
TTTGCTGGAG GAATATTCTT TCCAGAGCTG AGCCGAATCG CAACCGAGAA GTTCGTGAAA
AGGATAACAC GAGAGCTAAC CCAGCTGAAG GTCAATTTTC AGGGAATGGA GGCTCAACCC
AATCTTAAGG ACTACACCTT GAATGGTGAG AAATTCGATG TTGTGATCCT GGCCAACGGA
GTGTGGATCA CCAAGTCCTT GAAGTTGCCA ATTACCGCGT TTAAGGGCTA TGGGGCATGG
GTTAAGGGTA GTTCAAAGAT AAAGAACGCG TTCGTAACCG TGGACGAAGG CGTTGCAGTC
TCTCCGTTAT CTGACCACGT CAAGATTACA GGTGGATTCT CAGCTGATTA CGGAAGCGAA
TGGAGGACAG ATATCCTGTC TAAGGTCACA AGCCTTGTAA AGGTGGAGGA GGTAATGGAG
AGGAACATGG GTTTCAGACC TTGCTCGCCG GACGGTTTTC CTATAATGGG CAGGCTGGAT
AACGTTGTGG TTGCAACTGG AGCATGCAGG TTAGGGTGGA GTTATGCCCC AGCTATGGGC
TATTACGCCA GCGAACTGGC GCTAGGGAAG AGGAGCACAC TCGGATACGT TTCAAGGTAC
GTTGACAGGT TACGCTCTAG CGAGTAA
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| Protein sequence | MKVGIVGGGI VGLMSAYFLA KEGVSVTVYD PAPGKYSIHA AGLIEPYRFD RINTTSMIAK
MLRFMRRGVT EVRQLNKMWV VELLSSLNKS PPQEAWDLMR EMARLSLDTY AQMAEERNDF
DYHNDGLLEV YTSEEELEKG EKEEKQSPFS PKFEVTEVPG FAGGIFFPEL SRIATEKFVK
RITRELTQLK VNFQGMEAQP NLKDYTLNGE KFDVVILANG VWITKSLKLP ITAFKGYGAW
VKGSSKIKNA FVTVDEGVAV SPLSDHVKIT GGFSADYGSE WRTDILSKVT SLVKVEEVME
RNMGFRPCSP DGFPIMGRLD NVVVATGACR LGWSYAPAMG YYASELALGK RSTLGYVSRY
VDRLRSSE
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