| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1312 |
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| Symbol | |
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| ID | 5104563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 1289326 |
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| End bp | 1290678 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640507201 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001191394 |
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| Protein GI | 146304078 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.3758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA AAGAACTTGC AAAGGGATCT GTTTCATATA GAGAAGTAGT GGCTCAAGGA
GTGGGTGGAG CGGCCCCGGC AATGGCCAGC CTAGTGACGC TAACAGGGGC TGCAGCCTAC
GCCTATGGTT CTTTCCCGCT AGCTGTACTT TTAGCAACGG TAGCGGTACT CCTTGATGCT
ACTAGGTTAT CCATTACAAG TAGATACGTT CAAAGTGCTA GAGGGATTTA CGCATTCATC
TCAGAAGGTT TGGGAAAGAA AGTTGGTTAT TTTGTGGGTT GGGCTTACGT TCTCTACGCT
CTTACGGCTC TAGTTTTTAT CTACCTCTCC ATAGGAGTAT TTCTGCCAGG TGCATTGCAG
GTACTTGGGA TTAATACTCC GGGATGGATA TGGGCTCCCC TAGTCGTGGC CGTCGCGCTA
TTTGGAGGAA TCCTCTCCTA CCTTGGAATA AGACCATCCC TCAAATTTAC GCTCACCATG
AGCATCCTTG AAATAGCGTT CATTCTGGGA ACTTCCCTCT TAATCTTCAC TAAGGTGTCG
CCAGATCCTG CCACCTTTAC TCTCAAGTAC GCCCCACCGC CATCCGCATT CAACGTCGGA
GTAGGCATGG CTTTCGTGTT CCTGGCCTTC GCGGGATATG AGACTACCTC AGTCCTAGGA
GAGGAGGCTG TGGACCCTAA GAACACCATA ACTAAGGGTG TCTTCACCAG TGCCTTGCTC
GTGGGGATTA CCTACCTTAT GGCCAGCGAA GCCTTCACTG TGGGTTGGGG GGTCAACGAC
ATGTCATCCT TCTTTAGCCA ACTTGTTCCA GGCATCGTCC TGGGAATGAG ATATGGAGGT
TTCGTCCTGG CAGTTATCCT AACGATTCTG CTCATAAACA GCGGACTAAC AGACTCTGTA
ACTTTCTTCA ACACAGTATC CAGGGTGGTC TACGCCATGG CTAGGGACGG CGTCCTAGAT
AAGAGATTGG AGGGAATACA TGATAACAAC AGAACTCCCC ACGTAGCCAT CCTCTTCTCC
CTTGCCTTCT CTCTTCTATA CACTCTCATC TTCTCAGCAG CGATAGGGCC AGCTAACGTT
TTCTTATCAG TTGGTATCAC CACAACGTTC GGTTTCCTGA TTGCCATATT TACTGCAAAC
ATTAGTCTAT TATTCATCTT AAGAAGGTTT AGCGCACTTA ACGTGTGGAA CGTTCTTCTC
ACGGTGATCA TAAATGCGAT TCTAGGATTC GTAATATTTG CCAACATAGT TACAACTGCA
GTCAATTCCT TCGTTCTCAT TGGAGTTGCT ACATTCGCCG GCTGGATGAT AATCGGGGCA
ATTTATTATT GGTTGAGAAA AGTAAGAGTA TAA
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| Protein sequence | MSKKELAKGS VSYREVVAQG VGGAAPAMAS LVTLTGAAAY AYGSFPLAVL LATVAVLLDA
TRLSITSRYV QSARGIYAFI SEGLGKKVGY FVGWAYVLYA LTALVFIYLS IGVFLPGALQ
VLGINTPGWI WAPLVVAVAL FGGILSYLGI RPSLKFTLTM SILEIAFILG TSLLIFTKVS
PDPATFTLKY APPPSAFNVG VGMAFVFLAF AGYETTSVLG EEAVDPKNTI TKGVFTSALL
VGITYLMASE AFTVGWGVND MSSFFSQLVP GIVLGMRYGG FVLAVILTIL LINSGLTDSV
TFFNTVSRVV YAMARDGVLD KRLEGIHDNN RTPHVAILFS LAFSLLYTLI FSAAIGPANV
FLSVGITTTF GFLIAIFTAN ISLLFILRRF SALNVWNVLL TVIINAILGF VIFANIVTTA
VNSFVLIGVA TFAGWMIIGA IYYWLRKVRV
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