Gene Msed_0762 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0762 
Symbol 
ID5103451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp695187 
End bp697763 
Gene Length2577 bp 
Protein Length858 aa 
Translation table11 
GC content49% 
IMG OID640506667 
ProductSMC domain-containing protein 
Protein accessionYP_001190861 
Protein GI146303545 
COG category[L] Replication, recombination and repair 
COG ID[COG0419] ATPase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0108669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00239369 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGACTTG ACAGGGTCTA CTTGAAAGAT TTCCTCAGCC ACGAAAAAAC CACCGTTTCC 
TTTAAGGGAG ACATTAACGT CATAGTGGGA CAGAACGGTG CCGGAAAAAG CTCAATCATT
GAGGCAATTA CCTTTGCCCT CTTTAGGGAA GGGAAGGGTA AACAGGAGGA GATGATAAAG
AAGGGAAAGA CTAATGCTGA GTTGGAGCTC GTTCTCAGGG ACAACAACCT TGAGGTAAGG
GTTCTCAGGA AAATACCTCC TGGTGATCAG CTCTATGTCA ACGGTAAGCT TACGGCCAGG
GGCACCAAGG AGGTGACAAA GAAGATCGAG GAACTGGGTC TCAACAGCAA GGTGGTCACC
TCGACCATGA TAGTTAGACA GGGCGAGATA GAGACGATCT TTGACACGTT GACGGATGTG
CTCAAGAGGG TAATGATGAT AGACAACCTG GAGAAACTCA CCGAATCTGG AGGAAAGATC
AAGCAACTCA TGGACAAATA TGACCAGGAG GTCAGATCCC ACGAGATTTA CCTTGAGAAT
CTCAGGAGGC TTCAGGAGGA AAAGTCAAGC CTCGAAAGGG AAATCTCCTC CCTGACCGAG
AGGATGGAAA AGACGAGGGA GGAACTGCAG AAACTGGAGA GCGAGGAAGC CAAACTAAAG
GACAAGATAA AGGATCTAGA GGAGAAACAG AGGGAATATG ACGTCCTACT CTCAGAGAAG
AGGCTGGCAG AGGACGAATT GCAAAGGGTA ATGGCGGAGC TCAGGAATTT AGAGGGACTT
GAGCGTAGGA TCTCCAATCT CGAGGAGAAG GAGAAGGAGT TAGAGAAAAT AGTTTCTCTG
AGTGATACCA TCCTTGACCT TGAGGGCAAG AGGGCCAGGT TAACGGATAG GAAGAATGAG
TTTGAAAGGG TAAAGAGACA GTTCGAGAAA AAGAGCAAGG AGTTTGAGCA GAAGAGAAAG
CTAGAGCCTA GACACGAAGA GTATCAGAGG GTTGTATCAA GGCTTAAGGA ACTAGAGGAA
TACCATGAGA GATTCACCAG TCTGTACTCA ACTCTCAGGA ACTTAATGGA ACGTAAAAAT
AAAATCGAAC AGGAGGTGAG GATGCTTCCA AGGATTGCGG TGGAGGAGAT TCAGACGAGG
CTTGACTCGG TCTCTAAGGA GCTAGACGAA GCGGCCTCAC TTCAAAAGGA AAGAAAGGTG
GAGTATGATC AGATAAGGAA AAGCCTAGAC GCTCTCCTTT CAGCTACAGA GGGGAAGTGT
CCAGTATGCG GTGGCCCATT GGACGAACCC CATAGACAGG AGCTTACTCA GAAATACAGG
CAACGTCTGA CGGAGTTGAG CAAGGAGCTC AAGGACCTGG AGGGTAAGTT GGAAAGTCTC
AAAAGGGACA AGTCACGTCT GGAGGATGAA CATAAGAGGG CCATAAGGGT GGACGCGGAG
AGAAGGGGTA AGGAGAATGA TCTGGAGGGC CTATCTAGCG ATATAGCACG GCTGGAATCA
GAGCTCAAGC AATTGAAGGA ACTCGAGGAG GAATTCAGGG CCATGCAAAG GAGGAAGGAC
GAACTTGAGA ACGACGAAAG GAGTTACCTC CAGGTACAGG GGGTCAGCGA GGCTGAAGTG
ATGGAGCTAG AGGATCAGAT GGCTACCTAT TCCCACGACA TTTCCACACT GGAGGAGGAG
ATTGATCAGC TAGAGGGGAG AGTGGGAAAC CTCACGAAGC AGGACGTGGA AAGCGCTAAG
GGTCAGCTGG AAAAAGTGCG CAGGGAACTA TCTGAGCTAC AGAGGAAAAG GGGGGAGAAG
ACGAACCTTG AATCCAGAAT GGTGGAACTG AAGAGGAGCG TTGACGAGCT TTCCAGGAGG
ATTCAGCTCC TTGGGTTCAG GAGACAAGAT CTAGAACAGA TGAGGCGAGA CCTCGAGGTG
TTAAGTAAAC AGCTCAGGGA AGTTCACGGA GATCTTGGAA ACCTCGAGGG TAAACTTAAC
CAGGTTAAGG GGAGGCATCA GGAGGTTGAG AACGAGATTG CTCAACTCCA GGAGAAGGTC
AAGGAGGTGG AGAAGAGTAG GAGGGCTAAG GAGCGCCTTG AGAAGTTAAG AAAGGTACTT
TCCGAGGGAA TGCTTCAGTC ATACCTAATT TCTACGCTCA AGGGAAGGAT AGAGAATAAT
CTCAACGACA TAGTTTCCAT GTTTGATATC TCATATACGA GGATACTCGT AAACATGACC
CAGACCAAGA CCCTCAGTGG AAAGGTTGAG CTCACGGCCC TGAATCAGTC CGGCCAGCAA
CTCTCCATAG GGATGTTGAG CGGAGGCGAG AAGATCGCAG TTGCCCTAGC CCTTAGACTA
GCCATAGCTA GAGCCCTTAC GGGGGAGATA GGTTTCATGA TATTGGACGA GCCCACGGTT
CATCTAGATT CCATGAGAAG GGCCGAACTG CTCTCGGTGA TAAGGGAGTC CATGAACGTT
GTACCCCAGA TTATAGTTGT AACCCACGAC GATGAGGTGT TAAGGATAGC GGATTACGTA
ATAAGGGTGG AGAAAGTGGG GGAGAGTAGC AGGGTGAAGG AGGAGATCGC ACAGTGA
 
Protein sequence
MRLDRVYLKD FLSHEKTTVS FKGDINVIVG QNGAGKSSII EAITFALFRE GKGKQEEMIK 
KGKTNAELEL VLRDNNLEVR VLRKIPPGDQ LYVNGKLTAR GTKEVTKKIE ELGLNSKVVT
STMIVRQGEI ETIFDTLTDV LKRVMMIDNL EKLTESGGKI KQLMDKYDQE VRSHEIYLEN
LRRLQEEKSS LEREISSLTE RMEKTREELQ KLESEEAKLK DKIKDLEEKQ REYDVLLSEK
RLAEDELQRV MAELRNLEGL ERRISNLEEK EKELEKIVSL SDTILDLEGK RARLTDRKNE
FERVKRQFEK KSKEFEQKRK LEPRHEEYQR VVSRLKELEE YHERFTSLYS TLRNLMERKN
KIEQEVRMLP RIAVEEIQTR LDSVSKELDE AASLQKERKV EYDQIRKSLD ALLSATEGKC
PVCGGPLDEP HRQELTQKYR QRLTELSKEL KDLEGKLESL KRDKSRLEDE HKRAIRVDAE
RRGKENDLEG LSSDIARLES ELKQLKELEE EFRAMQRRKD ELENDERSYL QVQGVSEAEV
MELEDQMATY SHDISTLEEE IDQLEGRVGN LTKQDVESAK GQLEKVRREL SELQRKRGEK
TNLESRMVEL KRSVDELSRR IQLLGFRRQD LEQMRRDLEV LSKQLREVHG DLGNLEGKLN
QVKGRHQEVE NEIAQLQEKV KEVEKSRRAK ERLEKLRKVL SEGMLQSYLI STLKGRIENN
LNDIVSMFDI SYTRILVNMT QTKTLSGKVE LTALNQSGQQ LSIGMLSGGE KIAVALALRL
AIARALTGEI GFMILDEPTV HLDSMRRAEL LSVIRESMNV VPQIIVVTHD DEVLRIADYV
IRVEKVGESS RVKEEIAQ