| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0724 |
|---|
| Symbol | |
|---|
| ID | 5103762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 660432 |
|---|
| End bp | 660941 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506628 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_001190823 |
|---|
| Protein GI | 146303507 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1051] ADP-ribose pyrophosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.983328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATTT TCTCGGGAAA GAAATTTGAG GTGTATGTAG AGAAGGTGCC CCTACCAAAC
GGACGGGAGA GACAACTGGA GTATATTAAA CACAGGGGGT CGGTGGTTCT CCTCCCGCTA
CTTGAGGACA AGATCGTCAT GATCTATCAA TATAGACCAG TGATCGGGAA GTGGATTTAC
GAATTGCCTG CAGGCTCTGT CGAGGAGGGA GAGGATCCAC TATCTACCGC GAAGAGAGAA
CTAGTCGAGG AGACAGGCTA TGAGGCAGAA TCCATTACTG AGGTGATGTC CTTTTACCCA
TCACCAGGTA TAACCACCGA AGTGATGAGA CTATACCTAG CCAGAGATTT GAGGTACGTG
GGGGCCAAGC CAGAGGATTA CGAGGTGATT GAGGTAAGAC CTATGGAGTT TAGTCAAGTC
GAGAAATTGA TGAACGAGGG AGCTATACAG GACGCTAAGA CGTTGATAGG GATATACTAC
CTCAAGAGTA AAGGAATTCT AGGCCCATGA
|
|---|
| Protein sequence | MRIFSGKKFE VYVEKVPLPN GRERQLEYIK HRGSVVLLPL LEDKIVMIYQ YRPVIGKWIY
ELPAGSVEEG EDPLSTAKRE LVEETGYEAE SITEVMSFYP SPGITTEVMR LYLARDLRYV
GAKPEDYEVI EVRPMEFSQV EKLMNEGAIQ DAKTLIGIYY LKSKGILGP
|
|---|
| |