Gene Msed_0681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0681 
Symbol 
ID5105287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp623747 
End bp625108 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content48% 
IMG OID640506585 
Productgeranylgeranyl reductase 
Protein accessionYP_001190780 
Protein GI146303464 
COG category[C] Energy production and conversion 
COG ID[COG0644] Dehydrogenases (flavoproteins) 
TIGRFAM ID[TIGR02032] geranylgeranyl reductase family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00166018 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000684168 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAAACAAC TAACCTACGA TGTATTAATA ATTGGTGGAG GATTCGCAGG TTCCACCGCG 
GCATGGCACC TGGCGAATAA GGGACTTAAG ATACTTCTAA TAGACAGTAA GCCGTGGAAT
AGAATTGGGG ACAAGCCTTG CGGAGACGCA GTTAGCAAGG AACACTTTGA CAACCTTGGT
ATGCCCTACC CAGAGGGAGA ACAACTTGAA CAGAAGATCG ATGGAATCAA GTTATATAGC
CCCGATATGT CCACAGAGTG GACCGTTAAG GGCGAAGGAT TTGAGATAAA TGCCCCAGCC
TATACGCAGA GGATATTGAG GGAAGCCAGG GACAGGGGAG TTGAAGTGAT GGACTTAACC
ACTGCCATGA AGCCTATTCT AGAGGACGGC TTCGTAAAAG GTGCGGTGAT ATTTGACAGG
AGGAAGGAGG AACAGATAGA GGTAAGGGCC AAGATGGTCA TAGAGGCTAC TGGATACTCA
AGAAGCTTCA GGAGCAAACT CCCTCAGGAA ATCCCCGTCT CTGAGGACAT GGATGAGAGG
GACGCGGACA TCGCCTATAG GGAAGTGGCC TATACTAGGG AGGACATAGA TGAACCTGGA
TACTTGAAAA TCTTCATCAA CCAGACCACC TCACCTGGAG GATATTGGTG GTATTTCCCA
AAGGGGAAGG ATAAGGTAAA CATAGGACTG GGAATACAGG GAGGAATGGG CTACCCCAGC
ATCTACACCT TCTATGAGAA ATATTGGAAA GAATATGGTG CTGACGTAGA CAGGAACAGA
ATGATAGTAA AGGGAGGAGC CCTTGTGCCC ACCAGGAGGC CCCTGGACAC CCTGGTTTGG
AACGGTATAA TAGTCATAGG CGATTCTGGA TACACGGCCA ACCCAGTCCA CGGAGGCGGG
AAAGGATCGG CAATGATATC AGGCTTCTGC GCAGCTAGGG CGACGCTTAA CTCCTTTGAG
AAGGGAGACT TCTCGGCGCA ATCCCTCTGG GAAACTAACC TATGTTATAA CGAGCGTTAT
GGTGCAAAAC AGGCTAGCTT AGAGCTCTTC CGAAGGTTCC TTCAGAAGCT GTCAGATGAC
GACATAAATT ATGGAATGAG GAAGAAAGTC ATTAGGGAGG AGGATCTTCT AGAGGCAAGT
ATGACCGGAG ACCTTCAGCT ATCCGTAGCG GATAAGGCAA TGAGGGTAAT TGCAGGTTTA
GGAAGACCTT CTCTGCTATA CAAACTCAAG AATGTGGCGG AGTATATGAA GGAGATAAAG
GCTCTCTACA GAGCTTACCC AGCAGGTCCA GATCAGCTAC CAAAGTGGAA AGGGCAAGTA
AAGCAACTCA TCTTAGAATT TGACAAGGTA ATTTCCAAGT AG
 
Protein sequence
MKQLTYDVLI IGGGFAGSTA AWHLANKGLK ILLIDSKPWN RIGDKPCGDA VSKEHFDNLG 
MPYPEGEQLE QKIDGIKLYS PDMSTEWTVK GEGFEINAPA YTQRILREAR DRGVEVMDLT
TAMKPILEDG FVKGAVIFDR RKEEQIEVRA KMVIEATGYS RSFRSKLPQE IPVSEDMDER
DADIAYREVA YTREDIDEPG YLKIFINQTT SPGGYWWYFP KGKDKVNIGL GIQGGMGYPS
IYTFYEKYWK EYGADVDRNR MIVKGGALVP TRRPLDTLVW NGIIVIGDSG YTANPVHGGG
KGSAMISGFC AARATLNSFE KGDFSAQSLW ETNLCYNERY GAKQASLELF RRFLQKLSDD
DINYGMRKKV IREEDLLEAS MTGDLQLSVA DKAMRVIAGL GRPSLLYKLK NVAEYMKEIK
ALYRAYPAGP DQLPKWKGQV KQLILEFDKV ISK