| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0661 |
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| Symbol | rnhB |
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| ID | 5103821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 604868 |
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| End bp | 605494 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640506565 |
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| Product | ribonuclease HII |
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| Protein accession | YP_001190760 |
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| Protein GI | 146303444 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0164] Ribonuclease HII |
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| TIGRFAM ID | [TIGR00729] ribonuclease H, mammalian HI/archaeal HII subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000181972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00940331 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGGATAG GGATAGATGA AGCAGGGAGA GGATGCCTAA TTGGACCTAT GGTAGTTGTA
GGGGTTGCCT TGAACGAGAG GTCTATTGTA GCTCTGAAGC AGAGTGGAGT TAAGGATAGT
AAGAAACTTA CTCGTAAGAA AAGGGAGGAA CTATTTGACC TGATACTCTC TGAAAGCGAG
GGAGTAGCTG TAGCCAAGGC TCTTCCCGAG GAGATCGACA ACAACAACCT GAATTCGTTG
ACCTACACGA AAGTGATAGA GATTATTGAT GCGCTATCTT GGCTCAACCC TGAAGTTGTA
ACAGTGGACA AGGTGGGGAA AGAAATCGAG GTGATAAGAG CGATAGAGGA TCTAGGGTTC
AAACCTAACG TTGTACACAA GGCTGATGAG CTATTTGTTG AGGCTAGCTC TGCCAGCATT
GTTGCTAAGG TAATAAGGGA TAGGTTAATA GAGTCATTAA AGAAGGAATT CGGGGACTTT
GGGAGTGGGT ACCCATCTGA CAGGAAAACC GTTCAATGGG TACTAGACTT AGTATCCAGG
GGAGAGGAAC CACCAAATAT TATAAGGAGA TCGTGGAAAT TATTACTAAA ATACGCACCT
GGATTTTACG TGAATAAGGT GAGCTGA
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| Protein sequence | MRIGIDEAGR GCLIGPMVVV GVALNERSIV ALKQSGVKDS KKLTRKKREE LFDLILSESE
GVAVAKALPE EIDNNNLNSL TYTKVIEIID ALSWLNPEVV TVDKVGKEIE VIRAIEDLGF
KPNVVHKADE LFVEASSASI VAKVIRDRLI ESLKKEFGDF GSGYPSDRKT VQWVLDLVSR
GEEPPNIIRR SWKLLLKYAP GFYVNKVS
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