| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0650 |
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| Symbol | |
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| ID | 5103810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 594885 |
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| End bp | 596603 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640506554 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001190749 |
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| Protein GI | 146303433 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.200962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTAA GTCTACCGTT GCCATTCCGT AGCAAGCCTT CTCCTAAGAC CGAGCAGTTA
ACCTTTGGGG ATCTACCTAT AAGCCTCTAT CCCATAACAT TGCCCTACGA GGAATTACCT
GAGATTATGT CTGAGTATGA AGTTGACATG ATTAGCTTAA TGCCCCGATC AGTTAAATCA
TCCTTTGAGT CTAACAACGT CGAGTTGTCA ATAGCTAATC CTCACACATT CATTGTCTTC
GACCAGGACA AGGGGATATT CAGGTATGTC TTGGTAGAGC CACCAATAGA TCAAAACATT
TTCAGTGCTT ACATTTATCT GATCAAAGAG ATAGAAAGGT CACTATTAAG CAAGGAAGAC
ACAGTGGATA TAGCTAAAAT CCTGCTTCAG GCCAATGCCA AAATGCCCAG CATGGGCCTT
GTCCAAGGTC AGGTTGGTGG AATAACCAAG CTTAGTACTA AGGGAAAAGT GGCCCTTTAT
TACCTCTTAA GAAACATGTT TGGTTATAAC GTTCTTACTC CCCTCTTAGC TGATAACAAG
GTAGAGGACA TCTCATGTAG CGGAATTGGT TTACCTGTAT ACGTTTATCA CAGGGAGTAT
GATTACGTTC CCACAAATCT TACCATAACT GAGTCGATGA AGGTATTGGA CAAGGAGATT
AGCGGATCAG AGTTATTGGA TCAAATAGTG TTGAGGCTGA TCTCCCTATC AGGTAAAACC
GTGTCTATAG CTACTCCCAT AGCTGACGGT ATATTGCCGA AGGGAGACAG AATTGCAGCG
ACCTTTAGAT ATGAAGTTAG TGCTAGAGGA TCCAGCTTCG TTATAAGGAG ATTCAGCGAA
AGGCCGATAA CTATTCTAGA CCTGATAAAT AGTGGCGTCA TGAGTCCTGA GACTGCAGCC
TACCTGTGGT ATTCCATCGA TCTCAGAATG TCGTTCATGG TTATAGGAGT CACAGGTGCT
GGAAAGACCA CGGTGTTGGG GTCCATCCTT AACCTGGCAA AGGAATCCCT GAAGATAGTG
TCCATTGAGG ATATCCCGGA GATAAAGCTG GCACAGGAGA ACTGGGTTCA GCTTTACGCC
AGGCAGGCGT ACGGCGAGTC TAGCAAGGAA ATAACCCTCA TGGACCTGCT GAAGCTGTCC
CTGAGGTACA GGCCTGACAT AATAGTGGTC GGTGAGATAA GGGGTGCAGA GTCCTATATC
CTGTTCCAGG CCCTCTCCAC GGGTCACGGT GGTGCCACGA CTTTCCACGC CCACGACTCA
GAAAGCGCGG TCAAGAGGTT AATGAACCCT CCACTCAATA TACCTGCAGA GTGGATACCC
ATGAACAACA TTATCATTAG CGTGAGAAGA TTGCCTGTAC TCATAGGAGA TAAGATACAG
TTAAAGAGAA GGGTCGTAGC CATAGACGAA CTGGTGACTG CCTCAGATTT CAGGAGGGTA
GTTAATTGGG ATCCGAAAGT TGATAACCAC GTGGTAGACC TGGATAACGC TAAGGTTCTG
AGAAACAGAC TGGAGGAGTC TGGAAGATCA CTTGAGGAGG TGAAAGAAGA GATACAGAGA
AGGGCACTTT ACCTGAGGCT AATGGCTACC TCCAAGGACA TCGTTCAGAG CCCAGAGAGT
TATAAGATGG TCAAGAAGTA CATTATAAAG TATAGCCTGA GACCTGATGA GGCCATGAAA
GAAGTGGCCA GGATGTCCTC AATAAAGGTC ACGGTATGA
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| Protein sequence | MNLSLPLPFR SKPSPKTEQL TFGDLPISLY PITLPYEELP EIMSEYEVDM ISLMPRSVKS
SFESNNVELS IANPHTFIVF DQDKGIFRYV LVEPPIDQNI FSAYIYLIKE IERSLLSKED
TVDIAKILLQ ANAKMPSMGL VQGQVGGITK LSTKGKVALY YLLRNMFGYN VLTPLLADNK
VEDISCSGIG LPVYVYHREY DYVPTNLTIT ESMKVLDKEI SGSELLDQIV LRLISLSGKT
VSIATPIADG ILPKGDRIAA TFRYEVSARG SSFVIRRFSE RPITILDLIN SGVMSPETAA
YLWYSIDLRM SFMVIGVTGA GKTTVLGSIL NLAKESLKIV SIEDIPEIKL AQENWVQLYA
RQAYGESSKE ITLMDLLKLS LRYRPDIIVV GEIRGAESYI LFQALSTGHG GATTFHAHDS
ESAVKRLMNP PLNIPAEWIP MNNIIISVRR LPVLIGDKIQ LKRRVVAIDE LVTASDFRRV
VNWDPKVDNH VVDLDNAKVL RNRLEESGRS LEEVKEEIQR RALYLRLMAT SKDIVQSPES
YKMVKKYIIK YSLRPDEAMK EVARMSSIKV TV
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