| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0463 |
|---|
| Symbol | |
|---|
| ID | 5105459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 417905 |
|---|
| End bp | 419251 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640506369 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001190564 |
|---|
| Protein GI | 146303248 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0213055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTTG CAGGAAGAAT AGAAAGGCTT CCCTGGACCT CATTCCACAC CAGGTTGCTG
GTGTTGTTAA GTCTAGGGGA GTTCTTTGAG CTATACGACC TATTCGTGGG GGGTTTCGTG
GTTGCCCCTA TCTCTGCATT TTATAAGGTA TCCACGGCGG TGGCAATATA CTACAACATT
GCCGTGTTCT TCCTAGGCGC ATTTCTGGGA GCTATAATCT TCACATATGT GGGAGATGCA
CTCGGCAGAA GAACATCGCT AATCCTGAAC ATGGTCATTG CAGGTATTGG TCTATTGCTA
ACCCCGTTTT CACCCAGCAT ACAGGTGCTG GGTACCTTAA GGTTCATTAC AGGCCTAGGA
GTAGGTCCGG AGGCCCTCAT TGTCCTAGAC GTTTTAATCA CGGAGTTCTT TCCTTCGAGG
ATTCGGGGGA GAGCCCTTGC CATAGCGTAT ACCGCGTCCT GGACAGCTCC CATAGTGGTG
GCGATTCTAG CATATCTCCT TATTCCCCAT GTATACCTTA TTCCTGGATG GAAATGGTTA
TTCATTATAG GAGGCCTGGG GATATTCACC ATAATACCCT TCAGGTTCCT TATTCCAGAG
TCCCCAAGAT GGCTAGAGTC CAAGGGAAGA GTTGACGAGG CCGACAAGAT AGTCAGTAAC
ATGGAGAGTA TAGCAATGAG GGAGAAGGGG TCATTGGAGG AGCCTTTACA GGTTCAGGTA
ATCACGTCCC AAAGGGTGAG AATAAGTGAA CTTTTCAGCA ACGAGTATAG GAAAAGGACG
GTAATGTTAT GGATCTTCGA GTTCCTTCAG GCCGGGGTCT ACTACGGTTT CGCCTCACTG
GCTCCATCTG TTCTCGCCAG CAAGGGTTTC ACACTAGTTC ATACGTTAGA GTACTCCATG
TTGATATACA CGTCCTATTT CCTTAGTTCT CTTGCCTCAG TCTTCATCAT TGATAGTCAA
AGATTTGACC GGAAATGGCA AGTGAGTATA GTGATGCTAC TCATGGGGAT AACAGGGTTG
GCCTTTGGGT TCGCTATCAC GCCAGTGGAA GTGGTGGCAA CTGGGTTCCT GTTTGGGTTC
CTTTCAAACA TATTCTCCAA TGCATTCCAT CAATACGGAG CTGAACTTTA CCCCACTAGA
ATGAGGGCCT TCGCTGACGG AGTACAATAC TCCCTTAGTA GGCTGGGTAA CTATGTGTGG
CTCAGCGTGT TGCCTCTGGT TCTGGCCAAG TATGGCGCCG TCGGCATGTA CACAGTGGTG
TTTGTGATGG CTTTGATAGT TGCTCTAGAT GTTGGAGTCC TAGGTCCAAG AGCATCCAGG
ATTGAATTGG AAGAATTGTC CCACTAA
|
|---|
| Protein sequence | MTVAGRIERL PWTSFHTRLL VLLSLGEFFE LYDLFVGGFV VAPISAFYKV STAVAIYYNI
AVFFLGAFLG AIIFTYVGDA LGRRTSLILN MVIAGIGLLL TPFSPSIQVL GTLRFITGLG
VGPEALIVLD VLITEFFPSR IRGRALAIAY TASWTAPIVV AILAYLLIPH VYLIPGWKWL
FIIGGLGIFT IIPFRFLIPE SPRWLESKGR VDEADKIVSN MESIAMREKG SLEEPLQVQV
ITSQRVRISE LFSNEYRKRT VMLWIFEFLQ AGVYYGFASL APSVLASKGF TLVHTLEYSM
LIYTSYFLSS LASVFIIDSQ RFDRKWQVSI VMLLMGITGL AFGFAITPVE VVATGFLFGF
LSNIFSNAFH QYGAELYPTR MRAFADGVQY SLSRLGNYVW LSVLPLVLAK YGAVGMYTVV
FVMALIVALD VGVLGPRASR IELEELSH
|
|---|
| |