| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0279 |
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| Symbol | |
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| ID | 5104915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 239047 |
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| End bp | 239871 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640506185 |
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| Product | 2,3-dimethylmalate lyase |
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| Protein accession | YP_001190380 |
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| Protein GI | 146303064 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.577564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.130845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTCTTG GTAAAGAGTT CACCGTAATC CCCGGGATAT TCAACCCCTT CACCGCCCTC
CTTGCAGAAA GGGTTGGGTT CAAGGCAGTC TATCTCTCAG GTGGAGCCCT TACCTCATCC
CTGGGATTGC CTGATATAGG GATAATAGAC CTCTACGAGT TAGTGGACAT GGTTAGGAGG
ATAAGGGAAG TCACATCTAT TCCCATGATC GTGGACGCGG ACACAGGTTT CGGAGAGGCA
ATAAACGTGT ACAGAACTGT TTCCCTGCTG GATAGGGCAG GCGCAGACGC GATTCAGATC
GAGGATCAGA GGATGCCCAA GAAATGCGGT CACCTGGACG GTAAGGAGGT CATACCTCAC
TCAGAGATGG TTTCCAAGAT TAAGGCTGCT GTGAGAGCTA GGAAAAACGC CAAAATAATA
GCAAGGGTGG ACTCGAGAGC AATATTCGGG CTTCAGGACG CCATAGAGAG GGCTAAGGCT
TACCTAGATG CTGGGGCAGA CATAATTTTC CCGGAAGCTC TGCAGTCCAA GGAGGAGTTT
AGAGAGTTCG CTAAGGCAGT GAATGCTCCC CTTCTTGCTA ACATGACTGA GTTTGGGAAG
ACTCCCCTAA TAACTGCCAA GGAGTTCCAG GAAATGGGCT ACACCTACGT TATCTTTCCC
GTAACCATTT TCAGGGTTGC TGCGAAGGCC ATGGAGGACG CGCTGAAAAC CCTAATGAAC
GAAGGTACGC AGAAAAATCT CATGGACAAG ATGATGACTA GAAAGGAACA GTACGAGGTA
ATTCATTATG ACTTTTATGA GAAGTTAGAT AAAGAACTAG CATAA
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| Protein sequence | MSLGKEFTVI PGIFNPFTAL LAERVGFKAV YLSGGALTSS LGLPDIGIID LYELVDMVRR
IREVTSIPMI VDADTGFGEA INVYRTVSLL DRAGADAIQI EDQRMPKKCG HLDGKEVIPH
SEMVSKIKAA VRARKNAKII ARVDSRAIFG LQDAIERAKA YLDAGADIIF PEALQSKEEF
REFAKAVNAP LLANMTEFGK TPLITAKEFQ EMGYTYVIFP VTIFRVAAKA MEDALKTLMN
EGTQKNLMDK MMTRKEQYEV IHYDFYEKLD KELA
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