| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0227 |
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| Symbol | |
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| ID | 5104093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 187807 |
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| End bp | 188490 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640506132 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_001190328 |
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| Protein GI | 146303012 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0269] 3-hexulose-6-phosphate synthase and related proteins |
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| TIGRFAM ID | [TIGR03128] 3-hexulose-6-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0096121 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAGATCGG AGATTCTTGA AAGATTAAAA CAGGCGAAGC ATCTCCAGGT AGCTTTGGAC
TTCATTGATA TAAATGACGC CCTTAAGGTG GCGAGAGAGG TGGCGGATCT AAGAAACGTT
ATAATTGAAG CTGGAACGCC ACTTGTAAAG GCTGAAGGAA TTAGGGGATT ACTAAAGCTT
CGTGAGTTCA ACAACATTGT TTTAGCTGAC ACAAAGACCG CGGATGCTGG AGATGTTGAG
GTGGAAATAG CCCTCAGGGG CAAATCAAAC ATAATGACTG TCCTGGGCGC AATGGATGAT
TCCACGGTGG AGAGCGCAGT GAAGAGAGCT AGAGAGGTAG GAATAGTGGT TCAGGCAGAC
CTAATAGGAG TTAAGAACAC CGTGGAAAGA GCAAAGGAGC TCTTTGGAAT TGGAGTGGAC
ATTGTGGGAT TTCACATTGG CCTGGATGTA CAAAAGAAGA GAGGAGTAAC CGTAGCGGAC
CTCAAGGAGG AAATAAGGGA AGCTGGTAAG TACGGATTAA TCTCAGTTGC AGGAGGGTTA
AGTCCAAAGA CAATACCCGA GCTAGCTGAG CTTCCCATTT CGATTTACGT TGTGGGTGGA
GCAATAACTA GGAGTAGCAC TCCAAGGAAG GTGGCTGAGG AAATAATTAA AATCTTATCC
ACCAGTACTA TAGCAACACG GTGA
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| Protein sequence | MRSEILERLK QAKHLQVALD FIDINDALKV AREVADLRNV IIEAGTPLVK AEGIRGLLKL
REFNNIVLAD TKTADAGDVE VEIALRGKSN IMTVLGAMDD STVESAVKRA REVGIVVQAD
LIGVKNTVER AKELFGIGVD IVGFHIGLDV QKKRGVTVAD LKEEIREAGK YGLISVAGGL
SPKTIPELAE LPISIYVVGG AITRSSTPRK VAEEIIKILS TSTIATR
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