| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0150 |
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| Symbol | |
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| ID | 5105003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 121185 |
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| End bp | 122981 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640506053 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001190251 |
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| Protein GI | 146302935 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.132861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.011821 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTA AGCTTATCGC AGAGTATTTC GACAGACTTG AGAAAATATC CTCTAGAATA
CAGCTAACAT CTCTTCTTTC GGACCTCTTT AAGAACACTG AAAGGGAAGT GATAGATAAG
GTAGTGTACC TTATCCAGGG AAGGCTCTGG CCAGACTTTA CAGGAATGCC TGAGATAGGA
ATGGGAGAGA AATTTCTGAT TAAGGCAATA GCAATGGCCT ATGGAAATAA GGAAGAGGAA
GTTGAAAAAC TATACAAGAA TATAGGTGAT CTAGGTGAAG TTGCCTATTC CTTGAGGAGT
AAGGTAAAGG GCGTGAGCAT TCTCTCATTC GTCGGAGGAA ATCAGGAGGC CGGAGAACTT
GACGTGATGG AGGTATATAA CGAGCTAGTA AAGATAGCCA CTAGCACTGG GGAGGGAAGC
AGGGACATTA AGATAAGGAT TTTCGCTGGT CTGATAAAGA AGGCAACCCC CATAGAGGCC
AAGTATCTCG TCAGATTTGT TGAGGGGAGG CTAAGGCTAG GGATAGGAGA TGCGACGGTA
CTGGATGCGT TGGCCATAAC CTTTGGTGGA TCTGCAGACT ATAGGCCAAT AGTCGAAAGG
GCATACAACT TAAGGGCTGA CCTTGGCGAT ATAGCCAGAG TAATAGCTAC TGAGGGAATA
GAGAAACTGA AGAATATTTC CCCAACCCCT GGGATTCCAA TCAGACCAAT GTTGGCTGAA
AGGTTGCCCG ATCCAGAGGA GATAATGGAG AAAATGAACG GAAAGGCGCT AGTGGACTAC
AAATATGATG GTGAGAGGGC TCAGATTCAT AGAAAGGGAG ATAAGGTCAC CATTTTCTCT
AGACGAATGG AAAATATAAC TGACCAGTAC ATTGATGTAA CAGAGTACGT GAAACAATTC
GTTAAGGGTG ACAACTTCAT TGTGGAGGGT GAGATTGTAC CTGTTGATCC AGAGAGCGGT
GAAATGAGAC CCTTCCAAGA GCTTATGCAT AGGAGAAGGA AAAATAACAT AGCGGAAGCC
ATAAAGGAAT ATCCGGTCAA CCTATTCCTC TTTGATCTAA TGTTCTTTGA GGGAGAGGAT
TACACCACGA AGCCTCTCCC AGAGAGGAGG GCCAAACTTG AGGAGATTCT TGCAAGTAAC
GACAAGGTTC ATATCGCGTC ACATATAATT GCTGATAGAG TGGATAAGCT AAGGGAGTAC
TTCTATCAAG CAATATCTGA GGGTGCAGAG GGAGTTATGG TTAAGTCGAT TGGACCAGAC
TCCATATACC AGGCAGGGTC CAGAGGGTGG CTATGGATAA AGTTAAAGAG GGATTACCAG
AGCGAAATGG CTGATACGGT AGATCTAGTG GTAGTTGGTG CCTTTTACGG TAAGGGTAAA
AGGGGAGGTA AGTTTAGCTC CTTGCTTATG GCAGCTTACA ACCCAGAGAA GGATGTGTTT
GAGACGGTTT GTAAGGTTGC CTCTGGTTTC AGTGACCAGG AACTAGATGA GATGCAGAAG
AAGATAAACG AACTCAAGAG GGAGCAGAAG CATCCAAGGG TTGTATCCGA CATGATCCCT
GATGTCTGGG TATCGCCAAC CCTAGTAGCT GAGGTGATAG GTGCCGAAAT CACGATTTCT
CCCTTGCATA CCTGTTGCAG AGGCGAAAAA GGAGGACTAT CCATACGTTT CCCAAGATTT
ATCAGATGGA GGGATGACAA AAGTCCAGAG GATGCTACCA CTAACCAGGA GATAATGGAG
ATGTACTCGA AACAGCTCAA GAAAATAGAG GAAAAACCTG TAGATGAAAA TATCTAG
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| Protein sequence | MKFKLIAEYF DRLEKISSRI QLTSLLSDLF KNTEREVIDK VVYLIQGRLW PDFTGMPEIG
MGEKFLIKAI AMAYGNKEEE VEKLYKNIGD LGEVAYSLRS KVKGVSILSF VGGNQEAGEL
DVMEVYNELV KIATSTGEGS RDIKIRIFAG LIKKATPIEA KYLVRFVEGR LRLGIGDATV
LDALAITFGG SADYRPIVER AYNLRADLGD IARVIATEGI EKLKNISPTP GIPIRPMLAE
RLPDPEEIME KMNGKALVDY KYDGERAQIH RKGDKVTIFS RRMENITDQY IDVTEYVKQF
VKGDNFIVEG EIVPVDPESG EMRPFQELMH RRRKNNIAEA IKEYPVNLFL FDLMFFEGED
YTTKPLPERR AKLEEILASN DKVHIASHII ADRVDKLREY FYQAISEGAE GVMVKSIGPD
SIYQAGSRGW LWIKLKRDYQ SEMADTVDLV VVGAFYGKGK RGGKFSSLLM AAYNPEKDVF
ETVCKVASGF SDQELDEMQK KINELKREQK HPRVVSDMIP DVWVSPTLVA EVIGAEITIS
PLHTCCRGEK GGLSIRFPRF IRWRDDKSPE DATTNQEIME MYSKQLKKIE EKPVDENI
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