Gene Msed_0111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0111 
Symbolrps5p 
ID5103919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp93171 
End bp93815 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content43% 
IMG OID640506010 
Product30S ribosomal protein S5P 
Protein accessionYP_001190212 
Protein GI146302896 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0098] Ribosomal protein S5 
TIGRFAM ID[TIGR01020] ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000057291 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000379651 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCTGAGG AAGTACCTGT TTCAAATGTA GAGGAGTGGA AACCCAGGAC CAAAATTGGT 
CAGTTGGTTA AAGAGGGCAA GATAACTTCA ATTAAGGAGC TCTACGCAAG GAACATGAGT
ATAGCAGAAC CTGAAATTAT TGATGTTCTA TTGCCTAACA TGAAGTATGA GGTAATTGAT
ATAGGAATGG TACAGAAGCA AACAGATGCT GGTGAACTAT CCAGGTATAA GGTTCTCGTA
GTAATGGGGA ATTACGATGG TTATGTGAGC ATAGGCGTGG GTAAGTCTAA ACAGTTGAGG
GTGGCCATTC AAAAGGCAAT TAGAGACGCA AAAATGCATG TTATACCTGT TAGAAGAGGA
TGTGGAAGCT GGGAGTGTAC TTGTGGTGAA TCACATAGCT TACCTTTCCT TGTCTCAGGT
AAGTCAGGTA GCGCAGAGGT TGTGTTGAGG CCTGCACCTA AGGGAACAGG TTTAGTAGCT
GGAGGAGTAT TAAAGACCTT GCTGACCTAT GCCGGAATAA AGGATGTCTG GTCATTTAGT
AGGGGAGAGA CAAGAACAAC GGACAATTTC ATCATGGCAG GCTATAGAGC TCTCTATAAT
ACGTATAAAT TCGTAACCCC AGTTGATTGG GCAAGGAGAA GGTGA
 
Protein sequence
MAEEVPVSNV EEWKPRTKIG QLVKEGKITS IKELYARNMS IAEPEIIDVL LPNMKYEVID 
IGMVQKQTDA GELSRYKVLV VMGNYDGYVS IGVGKSKQLR VAIQKAIRDA KMHVIPVRRG
CGSWECTCGE SHSLPFLVSG KSGSAEVVLR PAPKGTGLVA GGVLKTLLTY AGIKDVWSFS
RGETRTTDNF IMAGYRALYN TYKFVTPVDW ARRR