| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0103 |
|---|
| Symbol | |
|---|
| ID | 5103911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 89327 |
|---|
| End bp | 90052 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640506002 |
|---|
| Product | 30S ribosomal protein S4e |
|---|
| Protein accession | YP_001190204 |
|---|
| Protein GI | 146302888 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1471] Ribosomal protein S4E |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000259785 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000558992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACTCATA TTACTAGATT AGAGGCTCCC TGGTTCTTAA GAGCGAGTAA AAAGGAGTAT
AAATGGACCG TTAGAGCCTC GCCTGGTCCC CATCCGTTAG GCAAGAGTAT CCCACTAGGT
TTACTTCTGA GGGATTATCT CGCGTTTACT TCTTCGCTTA AGGAATCTAA GAAGATAATT
TCAGACGGTA AGGTGCTAGT GGATGGAAGA GTAAGACGTG ATTACAAATA TCCTGTAGGT
TTGATGGATG TGATTGCTAT TCCTCATGCT GACCTATATT TGAGAATAGT TCCAGATCGT
GCTAGGCTTC TTAAACCTGT AAAGATCTCG GAAGAGGAAA GTAAATTCAA ACTCGTGAGG
TTGCTGAACA AAACGCTCGT GAAGGGGGGT TTACTTCAAT TTAATCTCGA AGATGGGAGG
AACCTTTTGA TAAGCAAGGA GTCCACTGAA ATGTTCAAGC TTCCTACCCT GACAACCTTA
AAGATATCAA TTCCAAACCA GGAGATATTA GGTGTGTATG GGTTTAAGGA AAATGTATAT
GTTATGGCTG TAGGTGGAAA GAACGCAGGA ATCATAGGTC AATTAAAGAG AATTCAGACC
TCTCCTTACA AGACCAGGCG TTACTCCATT GTTGTAATTA GAAGCCCAGA CGGTTCTGAA
TACGAGACTA ACCTTGAAAA TGCAATGGTT ATAGGAGAGG AAAAACCTGA GGTGAAGGTG
GAGTAA
|
|---|
| Protein sequence | MTHITRLEAP WFLRASKKEY KWTVRASPGP HPLGKSIPLG LLLRDYLAFT SSLKESKKII
SDGKVLVDGR VRRDYKYPVG LMDVIAIPHA DLYLRIVPDR ARLLKPVKIS EEESKFKLVR
LLNKTLVKGG LLQFNLEDGR NLLISKESTE MFKLPTLTTL KISIPNQEIL GVYGFKENVY
VMAVGGKNAG IIGQLKRIQT SPYKTRRYSI VVIRSPDGSE YETNLENAMV IGEEKPEVKV
E
|
|---|
| |