| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0100 |
|---|
| Symbol | rps17p |
|---|
| ID | 5103908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 88227 |
|---|
| End bp | 88562 |
|---|
| Gene Length | 336 bp |
|---|
| Protein Length | 111 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640505999 |
|---|
| Product | 30S ribosomal protein S17P |
|---|
| Protein accession | YP_001190201 |
|---|
| Protein GI | 146302885 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0186] Ribosomal protein S17 |
|---|
| TIGRFAM ID | [TIGR03630] archaeal ribosomal protein S17P |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000585841 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000466105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAG TAAAAACAAA AAACGTGGGC ATTCCTGGGA TCACTCCTCC TAGTAGGGAG
TGTGAGGACG AGGATTGCCC ATTCCATGGG AGTTTAAAGG TTAGAGGTAC TCTAATTGAG
GGTACCTTGG TTAAGAATAG GGCACCCAAG ATGGGTGTGA TCGAAAGAAC TTACCTGTTC
TACGATCATA AATACAAGAG ATATGAAAGG AGAACGAGCA GAATTCATGC GAGAGTTCCC
AGTTGTCTGG ACGTCAAGGA AGGAGACAGA GTTATAATAG GGGAAACTAG ACCCCTATCT
AAATCGGTTT CCTTCGTAGT TCTAGGCAAG AGGTGA
|
|---|
| Protein sequence | MSQVKTKNVG IPGITPPSRE CEDEDCPFHG SLKVRGTLIE GTLVKNRAPK MGVIERTYLF
YDHKYKRYER RTSRIHARVP SCLDVKEGDR VIIGETRPLS KSVSFVVLGK R
|
|---|
| |