Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0057 |
Symbol | |
ID | 5104635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 52182 |
End bp | 52883 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640505952 |
Product | PUA domain-containing protein |
Protein accession | YP_001190158 |
Protein GI | 146302842 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.510728 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTGG TAACGAAGTC GGGTAAGGAG TATGTATGTT TAATGGAGGT CCATTGTGAT TTTCAGGAGG AAAGGCTTAG GGCGATTGCC AAGGAGTTCG TTGGGACAAT ATATCAAAAG CCACCCGTGA GATCTTCGGT GAAGAGAAGG GTAAGGAAGA GGAAGATCTA TTCGCTGGAG GTTCTTGAGA TGGAAGGAAG AAGAGTCCTC ATGAAAATCT CCTCAGAACC TGGAACCTAC ATGAGGAAGA TTTGCCACGA CATGGGCATC CTCCTGGGTT GCGGTGCCCA CATGAGGGAA TTGAGGAGAA CAAGGTCAGG AATATTCACC GAGGATACAG TTGTAACGTT ACAACAGGTT TCGGAGGCCC TCTATCTTTA CCGCAACTGC GGTGAGGAGG ATGAGCTGAG GAGAATACTC ATTCCCATGG AGATGGCCTT CTGCGGGATA CCCAAGATAA TCGTAGACGA TGAGACAGTG AACTCCCTAG CCTACGGCTC CCCCTTGATG GCGCCAGGAA TAGTGGCCTT TCAGGGATTT AAGAAAGGAG ATACGGTGGC GCTCATAACT TGGAAGGGAG AGGGAATAGC CTTGGGAAAG GCCCTGGTAG ATTCAGTGAG TATGGGTAAG AGGGGAGAGG TAGTGAAGCC TGAAAGGGTA TTAATGGATA AAGATGTGTA CCCGAAGGCA TGGAAGAAAT GA
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Protein sequence | MSVVTKSGKE YVCLMEVHCD FQEERLRAIA KEFVGTIYQK PPVRSSVKRR VRKRKIYSLE VLEMEGRRVL MKISSEPGTY MRKICHDMGI LLGCGAHMRE LRRTRSGIFT EDTVVTLQQV SEALYLYRNC GEEDELRRIL IPMEMAFCGI PKIIVDDETV NSLAYGSPLM APGIVAFQGF KKGDTVALIT WKGEGIALGK ALVDSVSMGK RGEVVKPERV LMDKDVYPKA WKK
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