| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0035 |
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| Symbol | |
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| ID | 5105174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 34829 |
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| End bp | 36007 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640505929 |
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| Product | DNA-directed RNA polymerase subunit A'' |
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| Protein accession | YP_001190136 |
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| Protein GI | 146302820 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000531723 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.113614 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAATA ACACAGATAA TGAATATCTG GAACAGAAGT TATCCGAATT AAGTAAAAAA
GTTCCTGCCT CAATTATATC AAAGTTAAGG GAATCAATAA CTAATTCCCC TATAGAGATT
ACAAGGGATG AAATAGACAA AATAATAGAA ATAGTAATGA AAGACTATCT AAGTTCCCTT
GTCCATCCTG GAGAGGCAAT AGGTGTTGTG GCTGCCCAAT CAATAGGCGA GCCGGGTACG
CAGATGACAT TGAGGACCTT CCACTTTGCG GGTGTAAGGG AGTTAAACGT AACCCTAGGT
CTTCCGAGGC TCATAGAGAT TGTAGATGCG AGGAAAGTTC CTTCAACTCC TATGATGACC
ATTTATCTCA ACGAGGAGTA TGCAAAGGAC CGTGATATGG CATTAGAGGT TGCTAGGAGA
ATCGAATATA CTAGAGTGGA GCATGTGGTG GAGACGGTTA ACCTGGACGT TGGTGGTATG
GGCATTATAC TCAAACTTGA TCCAGTACTG CTTAAAGATA AGGGATTATC CACAGAGGAT
GTGGAAAAGG TCATCAAGAA GCTCAAGATG GGCGATTATA GGGTAGAAAA CTCCGATGAA
TATACAATAG CGATATACTT TGAAAACATG GAGACAGTGA CCGGATTATT CAAGGCTAGA
GAGAAAATCC TTTCAACGAA AATAAAAGGG GTTAAGGGAA TTAAGAGGGC GATAATCAGG
AAAAAGGGTG ACGAATACGT TATTATTACC GATGGGTCTA ACCTTGAGGG TGTTCTTGGA
GTTAAGGGAG TTGATGTCTC GAGGATAGAG ACAAATAATC TACACGAGGT AGAAAGCGTG
CTGGGTGTGG AGGCAGCAAG GGAGTTAATA ACGAGAGAGA TAAAGAGGGT CCTCGAGGAA
CAGGGTCTGG ACGTCGATAT TAGACATATC GAACTAGTTT CCGATATAAT GACAAGGACA
GGGGAAGTTA GGCAGATAGG GAGGCATGGT GTCACAGGTG AAAAGACTAG CGTATTGGCA
AGAGCCGCCT TCGAGGTTAC AGTAAAACAC CTTCTCGATG CCGCTGCTAG AGGTGACATG
GAAGAGTTTA AAGGAGTGGT AGAAAACATT ATTATAGGCC AACCAATTAA GCTGGGTACC
GGAATGGTTG AACTTTTAAT GAGACCCGCA AATAGGTGA
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| Protein sequence | MINNTDNEYL EQKLSELSKK VPASIISKLR ESITNSPIEI TRDEIDKIIE IVMKDYLSSL
VHPGEAIGVV AAQSIGEPGT QMTLRTFHFA GVRELNVTLG LPRLIEIVDA RKVPSTPMMT
IYLNEEYAKD RDMALEVARR IEYTRVEHVV ETVNLDVGGM GIILKLDPVL LKDKGLSTED
VEKVIKKLKM GDYRVENSDE YTIAIYFENM ETVTGLFKAR EKILSTKIKG VKGIKRAIIR
KKGDEYVIIT DGSNLEGVLG VKGVDVSRIE TNNLHEVESV LGVEAARELI TREIKRVLEE
QGLDVDIRHI ELVSDIMTRT GEVRQIGRHG VTGEKTSVLA RAAFEVTVKH LLDAAARGDM
EEFKGVVENI IIGQPIKLGT GMVELLMRPA NR
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