Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_0034 |
Symbol | |
ID | 5105173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 32163 |
End bp | 34823 |
Gene Length | 2661 bp |
Protein Length | 886 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640505928 |
Product | DNA-directed RNA polymerase subunit A' |
Protein accession | YP_001190135 |
Protein GI | 146302819 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02390] DNA-directed RNA polymerase subunit A' |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000287475 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0408299 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAGA GGTATCAAGT TAACGAGAAG ATAATAAAGG GAGTTAGATT CGGGATACTC TCCCCCGATG AAATAAGGAA GATGTCAGTT ACTGCCATAA TAACCGCTGA TGTGTATGAC GAAGATGGGA CGCCCATAGA AGGAAGCGTA ATGGATTCAA GACTCGGGAT AATAGAGCCT GGTCAGAAGT GTCCAATCTG TGGAAATGTT ATAGGCAACT GTCCTGGACA CTTTGGACAC ATTGAATTAG TAAGGCCCGT TATACATGTT GGATTCGTTA AGCATGTCTA TGATCTATTA AGATCCACAT GTAGGAGATG TGGTAGGGTA AAGATCAGCG AGAATGATAT AGAGAAATAC AGGAAGATTT ATGACGCGAT AAAGAAGAGG TGGCCCTCAG CGGCTAAAAG ACTCATTGAT CACGTGAAAA AAACGTCTAT GAAGGCAGCT GTATGTCCGC ATTGCTCAGA GAAACAACTG AAAATCAAAC TGGAGAAGCC CTACAACTTT TACGAGGAGA GAAAGGAGGG TGTAATGAGG CTCACTCCCT CCGATATCAG GGAAAGATTA GAAAGAATAC CTGATTCTGA TGTGGAGCTT CTAGGTTATG ATCCAACCAC TAGCAGACCC GAGTGGATAA TTCTTACCGT ACTACCTGTA CCTCCTATTA CCATCAGGCC CTCAATAATG ATAGAGAGCG GGATAAGGGC AGAGGACGAT CTAACTCACA AGCTCGTGGA CATAGTTAGA ATAAATGAGA GACTAAAGGA GAGCATAGAT GCAGGTGCCC CTCAGTTAAT TGTGGAAGAT CTTTGGGATC TCCTGCAGTA TCATGTGGCT ACCTATTTCG ATAATGAGAT ACCAGGCCTG CCCACATCTA AGCATAGATC GGGTAGACCG CTTAGAACTC TGGCACAAAG ACTCAAGGGT AAAGAGGGAA GATTTAGAGG TAACCTTTCA GGAAAGAGGG TTGATTTTTC AGCCAGAACC GTAATATCGC CTGATCCAAA TATCAGTATA GATGAGGTTG GAGTTCCATA CGACGTCGCA CAAATTCTCA CTGTACCAGA GAAGGTAACT AAATGGAACA TAGAGAGAAT GAGACAATAC GTTATAAACG GTCCAGATAA GTGGCCCGGT GCCAATTATG TGGTTAGGCC TGATGGAAGG AGAATAGACC TTAGATATGT TAAGGACAGA AAGGAGCTGG CTGCAACCCT AGCTCCTAAC TTTATAGTGG AAAGGCATTT GGTTGACGGA GATATAGTAA TTTTCAACAG ACAACCATCG CTTCATAGAA TATCCATGAT GGGTCATAAG GTGAGAGTTC TCCCAGGGAG AACCTTTAGG CTTAACCTTT TGGTGTGTCC ACCGTATAAC GCTGATTTTG ATGGCGATGA GATGAACCTC CATGTTCCTC AGTCAGAGGA GGCAATAGCG GAGACCAAGG AATTGATGAC AGTTCATCGC AATATATTAA CCCCTAGATA CGGAGGCCCC ATTATAGGTT CAGCCCAGGA TTATATTAGT GGCGCATATC TGCTCACCGT CAAAACGACT CTACTCACAG AAGATGAAGT TCAGACGATA CTGGGGGTAG CTAACATTAA CAAGAATTTA GAGGAACCAG CGATCCTGGC CCCTAAAAGG CTCTACACGG GGAAGCAGAT AGTCAGTCAC TTCCTTCCTG AAGATTTTAA CTTCCACGGT CCTGCAAACA TATCGAGCGG TGTAAGGTCA TGCAAGGATG AGGACTGCCC TCATGACTCT TACGTGGTGA TCAAGAAGGG GAAACTCCTG GAGGGAGTGT TTGACAAGAA AGCGCTAGGA AACCAGCAGG CTGAGAGTAT ACTCCACTGG CTCGTCAGAG AATATGATGA GGATTATGTT CTCTGGTTAA TGGACAATCT GTTTAAGGTA TTCCTTAGGT ACATCGAGCT CCACGGTCTA ACCATGACAC TCTCTGATGT AACTATTCCG GAGGAAGCCA CAAAGAAAAT CGCGGAAAGG GCACAGGAGG CGAGGAAAAA GGTTAACGAG CTCATTGAAA GTTATGAAAA AGGCCAACTC GAGGTCATCC CTGGTAGAAC GTTAGAAGAA AGTTTGGAAA GTTACATCCT TGATGCGCTA GACAAGCTAA GAAATGAAGC TGGAGAGATA GCCACGACTT ATCTGGATCC ATTTAATAAT GCCTATATCA TGGCAAGAAC TGGAGCAAGG GGAAGCGTAC TCAATATCAC TCAAATGGCA GCCATGCTAG GTCAACAATC AGTCAGAGGA GAGAGAATAA AACGTGGGTA TGCCACTAGG ACGCTCCCTC ACTTTAAGCC TGGGGATATA ACGCCAGAGG CTAGGGGATT CATTTACTCG TCCTTCAGAA GCGGATTAAA TCCAATCGAG ACCTTCTTCC ACGCTGCAGG TGGTAGAGAG GGTCTAGTGG ACACCGCTGT GAGGACGTCT CAGAGCGGTT ACATGCAGAG GAGGCTCATA AACGCGCTCT CCGACCTCAG GGTTGAGTAC GATGGTACGG TTAGAACGCT GTATGGAGAG ATGATCCAGA CTCTCTACGG TGGAGATGGA GTCCATCCAA TGCAAAGTGC ACATGGCAAG ACCATAGATG TAGATAGAGT CCTAGAGAGA GTAGTTGGTT GGAAGAGGTG A
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Protein sequence | MSERYQVNEK IIKGVRFGIL SPDEIRKMSV TAIITADVYD EDGTPIEGSV MDSRLGIIEP GQKCPICGNV IGNCPGHFGH IELVRPVIHV GFVKHVYDLL RSTCRRCGRV KISENDIEKY RKIYDAIKKR WPSAAKRLID HVKKTSMKAA VCPHCSEKQL KIKLEKPYNF YEERKEGVMR LTPSDIRERL ERIPDSDVEL LGYDPTTSRP EWIILTVLPV PPITIRPSIM IESGIRAEDD LTHKLVDIVR INERLKESID AGAPQLIVED LWDLLQYHVA TYFDNEIPGL PTSKHRSGRP LRTLAQRLKG KEGRFRGNLS GKRVDFSART VISPDPNISI DEVGVPYDVA QILTVPEKVT KWNIERMRQY VINGPDKWPG ANYVVRPDGR RIDLRYVKDR KELAATLAPN FIVERHLVDG DIVIFNRQPS LHRISMMGHK VRVLPGRTFR LNLLVCPPYN ADFDGDEMNL HVPQSEEAIA ETKELMTVHR NILTPRYGGP IIGSAQDYIS GAYLLTVKTT LLTEDEVQTI LGVANINKNL EEPAILAPKR LYTGKQIVSH FLPEDFNFHG PANISSGVRS CKDEDCPHDS YVVIKKGKLL EGVFDKKALG NQQAESILHW LVREYDEDYV LWLMDNLFKV FLRYIELHGL TMTLSDVTIP EEATKKIAER AQEARKKVNE LIESYEKGQL EVIPGRTLEE SLESYILDAL DKLRNEAGEI ATTYLDPFNN AYIMARTGAR GSVLNITQMA AMLGQQSVRG ERIKRGYATR TLPHFKPGDI TPEARGFIYS SFRSGLNPIE TFFHAAGGRE GLVDTAVRTS QSGYMQRRLI NALSDLRVEY DGTVRTLYGE MIQTLYGGDG VHPMQSAHGK TIDVDRVLER VVGWKR
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