| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrub_1342 |
|---|
| Symbol | |
|---|
| ID | 8879438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Meiothermus ruber DSM 1279 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013946 |
|---|
| Strand | - |
|---|
| Start bp | 1375254 |
|---|
| End bp | 1376777 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase sigma 70 subunit, RpoD subfamily |
|---|
| Protein accession | YP_003507124 |
|---|
| Protein GI | 291295726 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.796864 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.265845 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAA AACCCAGTCG CAAACCAACC GAAGCCACCG AACAACCCGA GACCAGCAAA
GCCGTTCGCA AGAGCAAAAA GGCCAGTCTC GTCGAACCAG CCCCGAAGTC CGTGGGCAAA
AAAACGGCCG CTTCCAAACC CAAGTCCGGC AGCCCGAAAA GCGCCAAGGG TACGGTCGTC
GCAGAGCCAG AAGAAGATAT CCTGGATGAG GAGCTGGTCG CTGACATGGA CGAGCTCGAG
CCCCCCGATC TCGAAGAAGA TCTGGAGGTC GGGCCTGACC TGGACGAGAT AGCCCCACCC
CCCCGCAAGG GGGGCGGGCT GGCCCCAGCC GCGCTTTCCG ACGAAGATCT CACGGAGGAG
TTGCTCGAGG CCGACCTCGA GGACATCGAG ATGCTGGAGC CGGACTTCGA GCTGGGCACC
CTGCCCATCG ATGAGGCCGA GGAGGAAATC GAGGAAGACC TGCCCCTCCC CCGCATCTCC
ACCTCCGACC CGGTAAGGCA ATACCTACAC GAGATCGGGC AGGTGCCCCT GCTGACCCTG
GAAGAAGAGA TCGACCTGGC CCGCCGGGTC GAGGAGGGCG TCGCAGCCGC CCAACGCCTG
GCCGAGGAAA CCGGTTTAGA CGCCGAGCTC ATCCGCCATG TCCTGCGCAG CCAGGTACAG
GGCAGCAGCC GCGTGGCCAG CATTCCCGGC ACCGATCTGC GCATCGACCC CGAAACCATC
GCAGCGGTGG ACGCCCGACT GCGGGCCCTG CCCCGCGAGG TCAAGCGCTA CTTGCACATC
GCACGCGACG GCGAGATTTG CCGCCAGCAC CTGATCGAGG CCAACCTGCG GCTGGTGGTT
AGCATCGCCA AAAAGTACAC CGGGCGCGGC CTTAGCTTCC TGGATCTCAT CCAGGAAGGC
AACCAGGGCC TGATCCGGGC GGTGGAGAAG TTCGAGTTCA AGCGCCGCTT TAAGTTTTCC
ACCTACGCCA CCTGGTGGAT TCGCCAGGCC ATCAACCGGG CCATCGCCGA CCAGGCCCGC
ACCATTCGCA TCCCGGTGCA CATGGTGGAG ACCATCAACA AACTCACCCG CACCGCCCGT
CAAATGCAGC AGGAGCTGGG CCGCGAACCC TCCTACGAGG AGATCGCCGA CGCCATGGGA
CCCGGCTGGG ACGCCAAGAA GGTAGAAGAA ACCTTCAAGA TCGCCCAGGA GCCGGTGAGC
CTGGAAACCC CCATCGGCGA CGAGAAGGAC AGCTTCTACG GCGACTTCAT CCCCGACGAG
CACATGGCCT CGCCGGTGGA CTCTGCTGCC CAGAGCATGC TTTCGGAGGA GCTGGAAAAA
GCCCTGGGCA AGCTCTCCGA GCGCGAGGCC ATGGTGCTCA AGCTGCGTAA GGGCCTGATT
GACGGGCGGG AACACACCTT AGAAGAGGTG GGCGCCTACT TCGGGGTGAC CCGCGAGCGC
ATCCGCCAGA TCGAGAACAA GGCCCTGCGC AAGCTCAAGT ACCACGAGTC GCGCACCCGC
AAGCTACGGG ACTTCCTGGA CTGA
|
|---|
| Protein sequence | MSKKPSRKPT EATEQPETSK AVRKSKKASL VEPAPKSVGK KTAASKPKSG SPKSAKGTVV
AEPEEDILDE ELVADMDELE PPDLEEDLEV GPDLDEIAPP PRKGGGLAPA ALSDEDLTEE
LLEADLEDIE MLEPDFELGT LPIDEAEEEI EEDLPLPRIS TSDPVRQYLH EIGQVPLLTL
EEEIDLARRV EEGVAAAQRL AEETGLDAEL IRHVLRSQVQ GSSRVASIPG TDLRIDPETI
AAVDARLRAL PREVKRYLHI ARDGEICRQH LIEANLRLVV SIAKKYTGRG LSFLDLIQEG
NQGLIRAVEK FEFKRRFKFS TYATWWIRQA INRAIADQAR TIRIPVHMVE TINKLTRTAR
QMQQELGREP SYEEIADAMG PGWDAKKVEE TFKIAQEPVS LETPIGDEKD SFYGDFIPDE
HMASPVDSAA QSMLSEELEK ALGKLSEREA MVLKLRKGLI DGREHTLEEV GAYFGVTRER
IRQIENKALR KLKYHESRTR KLRDFLD
|
|---|
| |