| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_5176 |
|---|
| Symbol | |
|---|
| ID | 6312530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5542797 |
|---|
| End bp | 5544260 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 642653857 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001927805 |
|---|
| Protein GI | 188584360 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CCCCCCTCTG GACGCCGGCT GCCCTGGAGT CCGCCACCGG CGGGCGCCTG
ATCGGCGCGC CCCGCGCCGT CACCGGTGCG TCGATCGACA CCCGCAGCCT GGAGCCCGGC
GACCTGTTCT TCGCCATCCG CGGCGAGGCG CGGGACGGGC ACGACTTCGT GCGTGCCGCC
TTGGAGAAGG GCGCCGGCGC AGCGGTGGTC GCGGCCGCGC GTGCGAACGA GTTCGAGGGC
GTCGGCCCGG TGCTGGCGGT GCCGGGGGAG GACGAGGATC CGGTTCTGGA GGCGATGCGC
CGCCTCGGGC TCGCCGCCCG CGCCCGCACC GGGGCCGCCA TCGTCGCGGT CACGGGTTCG
GTCGGCAAGA CCGGCACCAA GGAGGCCCTG CGCCACGTGC TCTCGGCCCA AGGCGCCACC
CACGCCTCGG TCGCCTCCTA CAACAACCAC TGGGGCGTGC CGCTGACGCT GGCGCGGATG
CCGGAACAGA CCCGCTTCGG CGTGTTTGAG ATCGGCATGA ATCACGGCGC CGAGATCCTG
CCGCTCACCG CGATGGTGCG GCCGGACGTG GCGCTGATCA CGACGGTCGA GCCGGTCCAT
ATCGAGCATT TTCGCTCGCT CTCGGCCATC GCCGACGCCA AGGGCGAGAT CTTTTCCGGG
CTCAAGCCCG GCGGTGTCGC GGTGATCAAC CGCGACAACC CGAATTACGA GCGGCTGCTG
GCTCACGCCC ACGCCTCGCG GGCCGGACGC GTCATCACCT TCGGCGAGCA TGCGGCGGCG
GATGTGCGGG CGAACCGGAT CCTGACCCGG CCCGATGTCT CGGTGGTCGA TGCCAGCGTG
ATGGGCGTGC CCCTGACCTA TCAGCTCGGC ACGCCGGGCC GGCACGTGGC GATGAACTCG
CTCGGCGTGC TCGCCTGCAT CCACGCGCTC GGTGCCGACC TCGCCCGCGC CGCCCTGTCG
CTCGCCGCGC TGAAGCCGCC GGTCGGGCGC GGCGAGCGCA CCGCCCTGCG GGTCGGGGAC
GGCGAAGCCT TCCTGATCGA CGAGAGCTAC AACGCCAACC CCGCCTCGAT CCGCGCCGCC
CTGGCGACGC TTGCCGGCAT CGAGACCGGC GCCAAGGGCC GGCGCATCGC CGTGCTCGGC
GACATGAAGG AGCTCGGCGC GGCCGGCGAG ACGCACCACC GCGAACTGGC GGATGCGGTC
GCGGGCCATG GCATCGACGT CGTCTTCGCC GTCGGCCCGC TGATGGCGCA CCTGTTCGAG
GCCCTGCCGA TGGCGGTGCG GGGCACGGCC GCGCCGAGCG CGGAGGGCGT CACCGACGCC
GTCCTCGCGA CCCTGCGGCC GGGCGATGCG GTGATGGTCA AGGGCTCCAA CTCCATGCGC
ATGGTCCGCA TTGTCGAAGC GGTCAAAGCC CGCTACGCGG TCGCGCCGGA CCCGCGCGAA
GCCTCGCTGA ACGCGGTCCG CTGA
|
|---|
| Protein sequence | MSDAPLWTPA ALESATGGRL IGAPRAVTGA SIDTRSLEPG DLFFAIRGEA RDGHDFVRAA
LEKGAGAAVV AAARANEFEG VGPVLAVPGE DEDPVLEAMR RLGLAARART GAAIVAVTGS
VGKTGTKEAL RHVLSAQGAT HASVASYNNH WGVPLTLARM PEQTRFGVFE IGMNHGAEIL
PLTAMVRPDV ALITTVEPVH IEHFRSLSAI ADAKGEIFSG LKPGGVAVIN RDNPNYERLL
AHAHASRAGR VITFGEHAAA DVRANRILTR PDVSVVDASV MGVPLTYQLG TPGRHVAMNS
LGVLACIHAL GADLARAALS LAALKPPVGR GERTALRVGD GEAFLIDESY NANPASIRAA
LATLAGIETG AKGRRIAVLG DMKELGAAGE THHRELADAV AGHGIDVVFA VGPLMAHLFE
ALPMAVRGTA APSAEGVTDA VLATLRPGDA VMVKGSNSMR MVRIVEAVKA RYAVAPDPRE
ASLNAVR
|
|---|
| |