Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpop_4747 |
Symbol | |
ID | 6313926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium populi BJ001 |
Kingdom | Bacteria |
Replicon accession | NC_010725 |
Strand | - |
Start bp | 5071342 |
End bp | 5072943 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642653426 |
Product | protein-export membrane protein SecD |
Protein accession | YP_001927378 |
Protein GI | 188583933 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.122054 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0344397 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGCT TCTCGAGAAC CAAGATCGTC GCGACGCTCG CCGTCATCCT GATCGGCCTC AGCCTCGCGG TGCCGAGCTT CATCCCGGCC GATAGCCGCA AGGCCTTCAT GGCCTCGCTG CCGTCGTGGT TCCCGAGCTG GATCATCCCG AGCCGTGCGA TCGTGCTCGG CCTCGACCTG CAGGGCGGCT CGCAGATCCT GCTTGAGATC GACCAGCCCG ACCTCGTCCG CTCGATGGTC ACGGGTCTGC GCGACGATGT GCGCCGCATC CTGCGCGAGG CCTCCGTCTC GCCCGAGGGC GGCATCCGCG TGATCAACCG CGGGGTCGAG CTGCGCATCC CCGATGCGGC GGCCCGCGCC AAGGTGATGC CGAAGCTGCG CGAACTCGCC CAGCCGATCA ACAACCCGCT GGCCGCCGGC GGCCAGACCC TCACGGTCAA CGAGGCCGAG AACGGCACGA TCCAGCTCGT CCTGACCGAC GCCGGCATCA ACGACCGCAC CCGCCGCGCG GTCAGCCAGG CGATCGAGGT CGTGCGCAAG CGCATCGATT TCGGCGGCAC CAAGGAGCCG TCGATCCAGC AGCAGGGCTC GGACCGCATC CTCGTTCAGG TGCCGGGGCT GCAGAACCCG CAGGAGCTGG AGGACCAGCT CGGCAAGACC GCCAAGCTCG AATTCCGCAT GCTGGCCGAT TCGCCCTCCG GCGACGTCGA CCTGCTGCCC TCGAAGGACG AGGGCGGTGC CAAGGTGCCA GTCGAGCGCC GCGTCATGGC CGACGGCAGC GATCTCACCG ACGCCCAGCC CGCCTTCGAC CCGCAGACCC ACGAGCCGAT GGTGAGCTTC AAGTTCAACC TGCGCGGCGC CCAGCGCTTC GGTCAGGCGA CCTCGGAGAA TGTCGGCCGG CGCATGGCGA TCGTGCTCGA CAACGTGATC CAGTCGGCCC CGGTGATCCG CTCGGCGATC ACAGGCGGCT CGGGCCAGAT CACCGGCAAC TTCACCGTCA AGGACGCCAA CGACCTCTCG GTGCTGCTGC GGGCGGGCGC GCTGCCCGCC AAGCTCACCG TGGTCGAGCG CCGCGTCGTC GGCCCCGGCC TCGGCCGCGA CTCGATCGAG GCCGGCGAGA AGGCGACACT GGTGGCCGCC GCCCTCGTCA TCATCTTCAT GTTCGCGACC TACGGCGTCT TCGGCTTCAT CGCCAACATC GCCCTCATCG TGCATGTGGG CCTGATCCTC GGGCTGATGT CGGTGCTGGA GGCGACCATG ACCCTGCCAG GCATCGCCGG CATCGTGCTC ACCATCGGCA CCGCGGTCGA TTCGAACGTG CTGATCTACG AGCGCATGCG CGAGGAGGCC CGCTCGGGCC GCTCCCTGGT CTCGGCGCTC CAGGCCGGCT TCGACCGGGC ATTCGCCACC ATCATCGATT CGAACTCGAC CATGGCGATC GCCGCGTTGC TGCTGTTCTT CATGGGCTCC GGCCCGGTGA AGGGCTTCGC CGTGGTGTTC ATCCTCGGCA TCCTCACCAC GGTCATCACC GCCGTGACGC TGACGCGCAT GATGATCGCG CTGTGGTACA CTTGGTTCAG GCCCAAGGCC CTGCCGTTCT GA
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Protein sequence | MLRFSRTKIV ATLAVILIGL SLAVPSFIPA DSRKAFMASL PSWFPSWIIP SRAIVLGLDL QGGSQILLEI DQPDLVRSMV TGLRDDVRRI LREASVSPEG GIRVINRGVE LRIPDAAARA KVMPKLRELA QPINNPLAAG GQTLTVNEAE NGTIQLVLTD AGINDRTRRA VSQAIEVVRK RIDFGGTKEP SIQQQGSDRI LVQVPGLQNP QELEDQLGKT AKLEFRMLAD SPSGDVDLLP SKDEGGAKVP VERRVMADGS DLTDAQPAFD PQTHEPMVSF KFNLRGAQRF GQATSENVGR RMAIVLDNVI QSAPVIRSAI TGGSGQITGN FTVKDANDLS VLLRAGALPA KLTVVERRVV GPGLGRDSIE AGEKATLVAA ALVIIFMFAT YGVFGFIANI ALIVHVGLIL GLMSVLEATM TLPGIAGIVL TIGTAVDSNV LIYERMREEA RSGRSLVSAL QAGFDRAFAT IIDSNSTMAI AALLLFFMGS GPVKGFAVVF ILGILTTVIT AVTLTRMMIA LWYTWFRPKA LPF
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