Gene Mpop_4747 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpop_4747 
Symbol 
ID6313926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium populi BJ001 
KingdomBacteria 
Replicon accessionNC_010725 
Strand
Start bp5071342 
End bp5072943 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content68% 
IMG OID642653426 
Productprotein-export membrane protein SecD 
Protein accessionYP_001927378 
Protein GI188583933 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.122054 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0344397 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCT TCTCGAGAAC CAAGATCGTC GCGACGCTCG CCGTCATCCT GATCGGCCTC 
AGCCTCGCGG TGCCGAGCTT CATCCCGGCC GATAGCCGCA AGGCCTTCAT GGCCTCGCTG
CCGTCGTGGT TCCCGAGCTG GATCATCCCG AGCCGTGCGA TCGTGCTCGG CCTCGACCTG
CAGGGCGGCT CGCAGATCCT GCTTGAGATC GACCAGCCCG ACCTCGTCCG CTCGATGGTC
ACGGGTCTGC GCGACGATGT GCGCCGCATC CTGCGCGAGG CCTCCGTCTC GCCCGAGGGC
GGCATCCGCG TGATCAACCG CGGGGTCGAG CTGCGCATCC CCGATGCGGC GGCCCGCGCC
AAGGTGATGC CGAAGCTGCG CGAACTCGCC CAGCCGATCA ACAACCCGCT GGCCGCCGGC
GGCCAGACCC TCACGGTCAA CGAGGCCGAG AACGGCACGA TCCAGCTCGT CCTGACCGAC
GCCGGCATCA ACGACCGCAC CCGCCGCGCG GTCAGCCAGG CGATCGAGGT CGTGCGCAAG
CGCATCGATT TCGGCGGCAC CAAGGAGCCG TCGATCCAGC AGCAGGGCTC GGACCGCATC
CTCGTTCAGG TGCCGGGGCT GCAGAACCCG CAGGAGCTGG AGGACCAGCT CGGCAAGACC
GCCAAGCTCG AATTCCGCAT GCTGGCCGAT TCGCCCTCCG GCGACGTCGA CCTGCTGCCC
TCGAAGGACG AGGGCGGTGC CAAGGTGCCA GTCGAGCGCC GCGTCATGGC CGACGGCAGC
GATCTCACCG ACGCCCAGCC CGCCTTCGAC CCGCAGACCC ACGAGCCGAT GGTGAGCTTC
AAGTTCAACC TGCGCGGCGC CCAGCGCTTC GGTCAGGCGA CCTCGGAGAA TGTCGGCCGG
CGCATGGCGA TCGTGCTCGA CAACGTGATC CAGTCGGCCC CGGTGATCCG CTCGGCGATC
ACAGGCGGCT CGGGCCAGAT CACCGGCAAC TTCACCGTCA AGGACGCCAA CGACCTCTCG
GTGCTGCTGC GGGCGGGCGC GCTGCCCGCC AAGCTCACCG TGGTCGAGCG CCGCGTCGTC
GGCCCCGGCC TCGGCCGCGA CTCGATCGAG GCCGGCGAGA AGGCGACACT GGTGGCCGCC
GCCCTCGTCA TCATCTTCAT GTTCGCGACC TACGGCGTCT TCGGCTTCAT CGCCAACATC
GCCCTCATCG TGCATGTGGG CCTGATCCTC GGGCTGATGT CGGTGCTGGA GGCGACCATG
ACCCTGCCAG GCATCGCCGG CATCGTGCTC ACCATCGGCA CCGCGGTCGA TTCGAACGTG
CTGATCTACG AGCGCATGCG CGAGGAGGCC CGCTCGGGCC GCTCCCTGGT CTCGGCGCTC
CAGGCCGGCT TCGACCGGGC ATTCGCCACC ATCATCGATT CGAACTCGAC CATGGCGATC
GCCGCGTTGC TGCTGTTCTT CATGGGCTCC GGCCCGGTGA AGGGCTTCGC CGTGGTGTTC
ATCCTCGGCA TCCTCACCAC GGTCATCACC GCCGTGACGC TGACGCGCAT GATGATCGCG
CTGTGGTACA CTTGGTTCAG GCCCAAGGCC CTGCCGTTCT GA
 
Protein sequence
MLRFSRTKIV ATLAVILIGL SLAVPSFIPA DSRKAFMASL PSWFPSWIIP SRAIVLGLDL 
QGGSQILLEI DQPDLVRSMV TGLRDDVRRI LREASVSPEG GIRVINRGVE LRIPDAAARA
KVMPKLRELA QPINNPLAAG GQTLTVNEAE NGTIQLVLTD AGINDRTRRA VSQAIEVVRK
RIDFGGTKEP SIQQQGSDRI LVQVPGLQNP QELEDQLGKT AKLEFRMLAD SPSGDVDLLP
SKDEGGAKVP VERRVMADGS DLTDAQPAFD PQTHEPMVSF KFNLRGAQRF GQATSENVGR
RMAIVLDNVI QSAPVIRSAI TGGSGQITGN FTVKDANDLS VLLRAGALPA KLTVVERRVV
GPGLGRDSIE AGEKATLVAA ALVIIFMFAT YGVFGFIANI ALIVHVGLIL GLMSVLEATM
TLPGIAGIVL TIGTAVDSNV LIYERMREEA RSGRSLVSAL QAGFDRAFAT IIDSNSTMAI
AALLLFFMGS GPVKGFAVVF ILGILTTVIT AVTLTRMMIA LWYTWFRPKA LPF