| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4720 |
|---|
| Symbol | |
|---|
| ID | 6313585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 5039403 |
|---|
| End bp | 5040275 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642653398 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001927351 |
|---|
| Protein GI | 188583906 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00355451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC CGCTGACCAA ATACCCGCGC CCGCCCTTCG AAACGCAACC CCAGAGCTTC
CCCGGCAAGA CGGCTCAGAT GGCGCCCGAG CCGGACCACG GCGAGGAGAG CTACAAGGGC
TCCGGCAAGC TCACCGGCAA GGCGGCCCTG GTGACCGGCG GCGACAGCGG CATCGGCCGG
GCGGTGGCGA TTGCCTATGC CCGCGAGGGC GCCGACGTGG CGATCTCCTA CCTGCCCGAC
GAGCAGAAGG ACGCGGAGGC CGTCGGCACC TGGATCGAGA AGGCGGGCCG GCGCGCCCTG
CTGCTTCCCG GCGACATCAA GGACGCGGCC TATGCCCGCG AGATCGTCGA GCGCACGGCC
AAGGAATTCG GCCGGCTCGA TATCCTGGTG AACAACGCCG CCTTCCAGCA GCCGAACCAG
GGCGTGACGG ACATCGACGA CGCGATCTTC GAGAAGCACT TCCAGACCAA CATCTTCGGC
CCGTTCTACG CCACCAAGGC GGCCCTGGCG CATCTCAAGC CCGGCGCCTC GGTGATCTTC
ACCTCCTCGG TCAATTCCAA GCACCCGGTG CCGACCCTGT TCGCCTACAG CGCCACCAAG
GGGGCGCTCA GCAACATGGT GCTCGGCCTC GCGCAGTTGC TGGCCGAAAA GGGCATCCGC
GTGAACGGCG TGCTGCCCGG CCCGATCTGG ACCCCGTTCA TTCCCGCCGG GATGAGCCAG
GATGCGGTGA AGACCTTCGG CAGCCAAGTG CCGTTCAATC GCCCCGGCCA GCCGGCGGAA
CTCGCCTCGG CCTACGTGAT GCTGGCAGCG GAGGAGAGCA GCTACACCTC CGGCGCGCTG
ATCACCGTCG CCGGCGGCAT GCCGATCTTC TGA
|
|---|
| Protein sequence | MTDPLTKYPR PPFETQPQSF PGKTAQMAPE PDHGEESYKG SGKLTGKAAL VTGGDSGIGR
AVAIAYAREG ADVAISYLPD EQKDAEAVGT WIEKAGRRAL LLPGDIKDAA YAREIVERTA
KEFGRLDILV NNAAFQQPNQ GVTDIDDAIF EKHFQTNIFG PFYATKAALA HLKPGASVIF
TSSVNSKHPV PTLFAYSATK GALSNMVLGL AQLLAEKGIR VNGVLPGPIW TPFIPAGMSQ
DAVKTFGSQV PFNRPGQPAE LASAYVMLAA EESSYTSGAL ITVAGGMPIF
|
|---|
| |