| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3853 |
|---|
| Symbol | |
|---|
| ID | 6312349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 4098810 |
|---|
| End bp | 4100312 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642652554 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001926515 |
|---|
| Protein GI | 188583070 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCG GGAACTCAGT GCGGCTGACA AGAGCAGTCG TCGACAAGGC CAAGGCGCGG
CCTTCGAGCT ACTTCGTCTG GGATCTGGAT CAACCGGGCT TCGGACTGCG CGTCCAGCCT
TCGGGCGTGA AGGCCTTCTA TGTCCAGTAT CGTGTGGGAC GAGGTCGAAC CGCAAAGCTC
GACAAGCTCA AGCTTGGCGA TGCCGGGACC ATGCGTGTCG AAGACGCTCG GAACGAGGCC
CGGATCAAGC GTGGGCTCGC AGCGGACGGA AAAGACCCGG CGAAGGAACG CCGGAAGCTC
CGAAACTCGT CGCTCGTATC GGAACTGATC GACCTTTACG AGAATGAGGG ATTGTACTGC
CGGACAGGTA AGCGGCAGGG GCAGCCCTTC GGAGAGAAGA CGAAGCGCTA CACGATGGGC
CGCCTTCGCA ACCACGTAGT CCCCATCCTC GGGAAGCTGA ATCTCTGCAA TCTGACGGAG
AAGGATGTCG AGACGCTCTT CAAAAAGGTG TCCGAAGGCG TAACTGCGAC CGGGGTTGGA
AAGGACCGCA AGCGGGACAG GAAGGGCAAG GCCGGGCAGA GGAGCTCCGG GTCCGAAGGA
GGCGAGTGCA AGGCGGGCGG GGGAGACTCC GCTGGCAGGC GGTCTGAGGT CTGCGGGGGG
GTGGGCGCCG CCAGGAAGGT CATCCGCGAC TTCTCGTCGG TCTGTAGCTT CGCGGTCGAG
CGCGGACTCA TGGTGTCCAA CCCGGTGCGG ACTGCGAGGG TTTCCAAGGT TGACGGTGAG
AGAAAGAGCT ATCTGACCCT GGCCATGATC AAGCGGCTAG GCAAAGCGCT GGACGATGCA
GAGCAGTTGC ATGGGGTCAA TCCCAAAGGC CCCGACCAGA TCCGGCTTTG GCTGCTGACC
GGCCTGAGGC GTGAAGAGGG GGCTGGTCTG CTCTGGGACG AGGTGGACTT CGAAAGGAAC
CAGATCGTGC TCAAGCGCTC GAAGAGCATA CCGGAGCGCC CACTGACCCC CGAGGCACTC
AAGCTTCTCA TGGAAATCTG GAGGAAAACG CCGAAGGTCC GTGGCAGGCC GGCCTCCAGG
TACGTCTTCC CTGCGGAGCA CGGCATCGGC CACTACACCG GCACCAAGCG TATTCTGCCG
CTACTCAAAC GCCTCGCAGG TCTCGACGAA CTCTTTCCGC ATCTGCTGCG GCATACCCTC
GGCTCGAGCG CCGTGTCCGC CGGCCTTAGT TTGCGGCTGA TCGGAGCGAT CCTCGGACAC
AAGAATCCCC GTTCGACGCT CGTCTACGCC CACGTGCAGG ACAAGGCTGC ATTGGACGCT
GCCGCTCCGG TCGCTTCGAG CATCGCCTGC GCCCTTGTAT CCTTCAGGTC GGATGCCATG
CCGTGCCGTG CGGCCGCTGC CGGCCCGCCC CCTCCCCTCG TTCGGCCGGG GCAGTTCGTT
CATCCCGCGG CAAGCGCGCC GGAGCAGACT GCGCGCTCCT CCCGCAAGGA GTCGAGCCTG
TGA
|
|---|
| Protein sequence | MKRGNSVRLT RAVVDKAKAR PSSYFVWDLD QPGFGLRVQP SGVKAFYVQY RVGRGRTAKL
DKLKLGDAGT MRVEDARNEA RIKRGLAADG KDPAKERRKL RNSSLVSELI DLYENEGLYC
RTGKRQGQPF GEKTKRYTMG RLRNHVVPIL GKLNLCNLTE KDVETLFKKV SEGVTATGVG
KDRKRDRKGK AGQRSSGSEG GECKAGGGDS AGRRSEVCGG VGAARKVIRD FSSVCSFAVE
RGLMVSNPVR TARVSKVDGE RKSYLTLAMI KRLGKALDDA EQLHGVNPKG PDQIRLWLLT
GLRREEGAGL LWDEVDFERN QIVLKRSKSI PERPLTPEAL KLLMEIWRKT PKVRGRPASR
YVFPAEHGIG HYTGTKRILP LLKRLAGLDE LFPHLLRHTL GSSAVSAGLS LRLIGAILGH
KNPRSTLVYA HVQDKAALDA AAPVASSIAC ALVSFRSDAM PCRAAAAGPP PPLVRPGQFV
HPAASAPEQT ARSSRKESSL
|
|---|
| |